PDB (2005)
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Other Years: 2008 | 2007 | 2006 | 2005 | 2004 | 2003
[edit]
=2FHD=
| Crystal structure of Crb2 tandem tudor domains
|
| Lee, J., Botuyan, M.V., Thompson, J.R., Mer, G. |
| Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair. |
| Cell(Cambridge,Mass.) v127:pp. 1361-1373, 2006 |
| PDB Code: 2FHD |
| PDB Deposition Date: 2005-12-23 |
[edit]
=2FC2=
| NO-HEME complex in a bacterial nitric oxide synthase. An Fe(III)-NO may cause nitrosation.
|
| Pant, K., Crane, B.R. |
| Nitrosyl-heme structures of Bacillus subtilis nitric oxide synthase have implications for understanding substrate oxidation. |
| Biochemistry, v45: pp.2537-2544, 2006 |
| PDB Code: 2FC2 |
| PDB Deposition Date: 2005-12-10 |
[edit]
=2FC1=
| Heme NO Complex in NOS
|
| Pant, K., Crane, B.R. |
| Nitrosyl-heme structures of Bacillus subtilis nitric oxide synthase have implications for understanding substrate oxidation. |
| Biochemistry, v45: pp.2537-2544, 2006 |
| PDB Code: 2FC1 |
| PDB Deposition Date: 2005-12-10 |
[edit]
=2FBZ=
| Heme-No complex in a bacterial Nitric Oxide Synthase
|
| Pant, K., Crane, B.R. |
| Nitrosyl-heme structures of Bacillus subtilis nitric oxide synthase have implications for understanding substrate oxidation. |
| Biochemistry, v45: pp.2537-2544, 2006 |
| PDB Code: 2FBZ |
| PDB Deposition Date: 2005-12-10 |
[edit]
+2FBO+
| Crystal Structure of the Two Tandem V-type Regions of VCBP3 (v-region-containing chitin binding protein) to 1.85 A
|
| Hernandez Prada, J.A., Haire, R.N., Jakoncic, J., Cannon, J.P., Litman, G.W., Ostrov, D.A. |
| Ancient evolutionary origin of diversified variable regions demonstrated by crystal structures of an immune-type receptor in amphioxus |
| Nat.Immunol., v7 : pp.875-882, 2006 |
| PDB Code: 2FBO |
| PDB Deposition Date: 2005-12-09 |
[edit]
--2FAH--
| The structure of mitochondrial PEPCK, Complex with Mn and GDP
|
| Holyoak, T., Sullivan, S.M., Nowak, T. |
| Structural Insights into the Mechanism of PEPCK Catalysis |
| Biochemistry, v45 : 8254-8263, 2006 |
| PDB Code: 2FAH |
| PDB Deposition Date: 2005-12-07 |
[edit]
--2FAG--
| The structure of chicken mitochondrial PEPCK in complex with PEP
|
| Holyoak, T., Sullivan, S.M., Nowak, T. |
| Structural Insights into the Mechanism of PEPCK Catalysis |
| Biochemistry, v45 : 8254-8263, 2006 |
| PDB Code: 2FAG |
| PDB Deposition Date: 2005-12-07 |
[edit]
--2FAF--
| The structure of chicken mitochondrial PEPCK
|
| Holyoak, T., Sullivan, S.M., Nowak, T. |
| Structural Insights into the Mechanism of PEPCK Catalysis |
| Biochemistry, v45 : 8254-8263, 2006 |
| PDB Code: 2FAF |
| PDB Deposition Date: 2005-12-07 |
[edit]
=2FA3=
| HMG-CoA synthase from Brassica juncea in complex with acetyl-CoA and acetyl-cys117.
|
| Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P. |
| Structural basis for the design of potent and species-specific inhibitors of 3-hydroxy-3-methylglutaryl CoA synthases. |
| Proc.Natl.Acad.Sci.Usa, v103: pp.11491-11496, 2006 |
| PDB Code: 2FA3 |
| PDB Deposition Date: 2005-12-06 |
[edit]
=2FA0=
| HMG-CoA synthase from Brassica juncea in complex with HMG-CoA and covalently bound to HMG-CoA
|
| Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P. |
| Structural basis for the design of potent and species-specific inhibitors of 3-hydroxy-3-methylglutaryl CoA synthases. |
| Proc.Natl.Acad.Sci.Usa, v103: pp.11491-11496, 2006 |
| PDB Code: 2FA0 |
| PDB Deposition Date: 2005-12-06 |
[edit]
=2F9A=
| HMG-CoA synthase from Brassica juncea in complex with F-244
|
| Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P. |
| Structural basis for the design of potent and species-specific inhibitors of 3-hydroxy-3-methylglutaryl CoA synthases. |
| Proc.Natl.Acad.Sci.Usa, v103: pp.11491-11496, 2006 |
| PDB Code: 2F9A |
| PDB Deposition Date: 2005-12-05 |
[edit]
=2F82=
| HMG-CoA synthase from Brassica juncea in the apo-form
|
| Pojer, F., Ferrer, J.L., Richard, S.B., Noel, J.P. |
| Structural basis for the design of potent and species-specific inhibitors of 3-hydroxy-3-methylglutaryl CoA synthases. |
| Proc.Natl.Acad.Sci.Usa, v103: pp.11491-11496, 2006 |
| PDB Code: 2F82 |
| PDB Deposition Date: 2005-12-01 |
[edit]
=2F6X=
| Crystal Structure of (S)-3-O-Geranylgeranylglyceryl Phosphate Synthase complexed with sn-G1P and MPD
|
| Payandeh, J.M. |
| The crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase reveals an ancient fold for an ancient enzyme. |
| J.Biol.Chem., v281: pp.6070-6078, 2006 |
| PDB Code: 2F6X |
| PDB Deposition Date: 2005-11-29 |
[edit]
=2F6U=
| Crystal Structure of (S)-3-O-Geranylgeranylglyceryl Phosphate Synthase complexed with citrate
|
| Payandeh, J. |
| The crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase reveals an ancient fold for an ancient enzyme. |
| J.Biol.Chem., v281: pp.6070-6078, 2006 |
| PDB Code: 2F6U |
| PDB Deposition Date: 2005-11-29 |
[edit]
--2F6H--
| Myosin V cargo binding domain
|
| Pashkova, N., Jin, Y., Ramaswamy, S., Weisman, L.S. |
| Structural basis for myosin V discrimination between distinct cargoes. |
| Embo J., v25 : 693-700, 2006 |
| PDB Code: 2F6H |
| PDB Deposition Date: 2005-11-29 |
[edit]
=2F2P=
| Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode
|
| Ye, Q., Wong, A., Jia, Z. |
| Structure of calmodulin bound to a calcineurin Peptide: a new way of making an old binding mode. |
| Biochemistry, 45: 738-745, 2006 |
| PDB Code: 2F2P |
| PDB Deposition Date: 2005-11-17 |
[edit]
=2F2O=
| Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode
|
| Ye, Q., Wong, A., Jia, Z. |
| Structure of calmodulin bound to a calcineurin Peptide: a new way of making an old binding mode. |
| Biochemistry, 45: 738-745, 2006 |
| PDB Code: 2F2O |
| PDB Deposition Date: 2005-11-17 |
[edit]
--2F23--
| Crystal structure of GreA factor homolog 1 (Gfh1) protein of Thermus thermophilus
|
| Laptenko, O., Kim, S.-S., Lee, J., Starodubtseva, M., Cava, F., Berenguer, J., Kong, X.P., Borukhov, S. |
| pH-dependent conformational switch activates the inhibitor of transcription elongation. |
| Embo J., v25 : pp.2131-2141, 2006 |
| PDB Code: 2F23 |
| PDB Deposition Date: 2005-11-15 |
[edit]
+2F1V+
| Outer membrane protein OmpW
|
| Hong, H., Patel, D.R., Tamm, L.K., van den Berg, B. |
| The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel. |
| J.Biol.Chem., v281 : pp.7568-7577, 2006 |
| PDB Code: 2F1V |
| PDB Deposition Date: 2005-11-15 |
[edit]
+2F1T+
| Outer membrane protein OmpW
|
| Hong, H., Patel, D.R., Tamm, L.K., van den Berg, B. |
| The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel. |
| J.Biol.Chem., v281 : pp.7568-7577, 2006 |
| PDB Code: 2F1T |
| PDB Deposition Date : 2005-11-15 |
[edit]
+2F1C+
| Crystal structure of the monomeric porin OmpG
|
| Subbarao, G.V., van den Berg, B. |
| Crystal Structure of the Monomeric Porin OmpG. |
| J.Mol.Biol., v360 : pp.750-759, 2006 |
| PDB Code: 2F1C |
| PDB Deposition Date: 2005-11-14 |
[edit]
+2D40+ (not 2D4O)
| Crystal Structure of Z3393 from Escherichia coli O157:H7
|
| Adams, M.A., Jia, Z., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) |
| Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7 |
| Mol.Microbiol. v61:pp. 1469-1484, 2006 |
| PDB Code: 2D40 |
| PDB Deposition Date: 2005-10-05 |
[edit]
+2BRA+
| STRUCTURE OF N-TERMINAL FAD BINDING MOTIF OF MOUSE MICAL
|
| Nadella, M., Bianchet, M.A., Gabelli, S.B., Amzel, L.M. |
| STRUCTURE OF N-TERMINAL FAD BINDING MOTIF OF MOUSE MICAL |
| Proc.Natl.Acad.Sci.USA, v102 : pp.16830, 2005 |
| PDB Code: 2BRA |
| PDB Deposition Date: 2005-05-04 |
[edit]
+2BC4+
| Crystal structure of HLA-DM
|
| Nicholson, M.J., Moradi, B., Seth, N.P., Xing, X., Cuny, G.D., Stein, R.L., Wucherpfennig, K.W. |
| Small molecules that enhance the catalytic efficiency of HLA-DM. |
| J.Immunol., v176 : pp.4208-4220, 2006 |
| PDB Code: 2BC4 |
| PDB Deposition Date: 2005-10-18 |
[edit]
+2B61+
| Crystal Structure of Homoserine Transacetylase
|
| Mirza, I.A., Nazi, I., Korczynska, M., Wright, G.D., Berghuis, A.M. |
| Mirza, I.A., Nazi, I., Korczynska, M., Wright, G.D., Berghuis, A.M. Crystal Structure of Homoserine Transacetylase from Haemophilus influenzae Reveals a New Family of alpha/beta-Hydrolases |
| Biochemistry, v44 : pp.15768-15773, 2005 |
| PDB Code: 2B61 |
| PDB Deposition Date: 2005-09-29 |
[edit]
=2B59=
| The type II cohesin dockerin complex
|
| Adams, J.J., Smith, S.P., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) |
| Mechanism of bacterial cell-surface attachment revealed by the structure of cellulosomal type II cohesin-dockerin complex. |
| Proc.Natl.Acad.Sci.Usa, v103 : pp.305-310, 2006 |
| PDB Code: 2B59 |
| PDB Deposition Date: 2005-09-27 |
[edit]
+2B4Z+
| Crystal structure of cytochrome C from bovine heart at 1.5 A resolution.
|
| Mirkin, N., Jakoncic, J., Stojanoff, V., Moreno, A. |
| High resolution X-ray crystallographic structure of bovine heart cytochrome c and its application to the design of an electron transfer biosensor. |
| Proteins 70: 83-92, 2008 |
| PDB Code: 2B4Z |
| PDB Deposition Date: 2005-09-27 |
[edit]
+2AVP+
| Crystal structure of an 8 repeat consensus TPR superhelix
|
| Kajander, T., Lopez-Cortajarena, A.L., Main, E.R., Mochrie, S.G., Regan, L. |
| Structure and stability of designed TPR protein superhelices: unusual crystal packing and implications for natural TPR proteins |
| Acta Cryst. D63: 800-811, 2007 |
| PDB Code: 2AVP |
| PDB Deposition Date: 2005-08-30 |
[edit]
=2AQ4=
| Ternary complex of the catalytic core of REV1 with DNA and dCTP.
|
| Nair, D.T., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K. |
| Rev1 employs a novel mechanism of DNA synthesis using a protein template. |
| Science, v309 : pp.2219-2222, 2005 |
| PDB Code: 2AQ4 |
| PDB Deposition Date : 2005-08-17 |
[edit]
+2ANP+
| Functional Glutamate 151 to Histidine mutant of the aminopeptidase from Aeromonas Proteolytica.
|
| Bzymek, K.P., Moulin, A., Swierczek, S.I., Ringe, D., Petsko, G.A., Holz, R.C. |
| Kinetic, Spectroscopic, and X-ray Crystallographic Characterization of the Functional E151H Aminopeptidase from Aeromonas proteolytica. |
| Biochemistry, v44 : pp.12030-12040, 2005 |
| PDB Code: 2ANP |
| PDB Deposition Date: 2005-08-11 |
[edit]
=2AN0=
| Crystal Structure of the P332G mutant of the Bacillus subtilis NOS
|
| Pant, K., Crane, B.R. |
| Structure of a loose dimer: an intermediate in nitric oxide synthase assembly. |
| J.Mol.Biol., v352: pp.932-940, 2005 |
| PDB Code: 2AN0 |
| PDB Deposition Date: 2005-08-10 |
[edit]
-1ZHF-
| Crystal structure of selenomethionine substituted isoflavanone 4'-O-methyltransferase
|
| Liu, C.-J., Deavours, B.E., Richard, S., Ferrer, J.-L., Dixon, R.A., Noel, J.P. |
| Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses. |
| Plant Cell 18: 3656-3669 |
| PDB Code: 1ZHF |
| PDB Deposition Date: 2005-04-25 |
[edit]
-1ZGJ-
| Crystal structure of isoflavanone 4'-O-methyltransferase complexed with (+)-pisatin
|
| Liu, C.-J., Deavours, B.E., Richard, S., Ferrer, J.-L., Dixon, R.A., Noel, J.P. |
| Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses. |
| Plant Cell 18: 3656-3669 |
| PDB Code: 1ZGJ |
| PDB Deposition Date: 2005-04-21 |
[edit]
-1ZGA-
| Crystal structure of isoflavanone 4'-O-methyltransferase complexed with (+)-6a-hydroxymaackiain
|
| Liu, C.-J., Deavours, B.E., Richard, S., Ferrer, J.-L., Dixon, R.A., Noel, J.P. |
| Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses. |
| Plant Cell 18: 3656-3669 |
| PDB Code: 1ZGA |
| PDB Deposition Date: 2005-04-20 |
[edit]
-1ZG3-
| Crystal structure of the isoflavanone 4'-O-methyltransferase complexed with SAH and 2,7,4'-trihydroxyisoflavanone
|
| Liu, C.-J., Deavours, B.E., Richard, S., Ferrer, J.-L., Dixon, R.A., Noel, J.P. |
| Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses. |
| Plant Cell 18: 3656-3669 |
| PDB Code: 1ZG3 |
| PDB Deposition Date: 2005-04-20 |
[edit]
+1ZDY+
| Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with TAPS
|
| Kuzuyama, T., Noel, J.P., Richard, S.B. |
| Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products. |
| Nature, v435 : pp.983-987, 2005 |
| PDB Code: 1ZDY |
| PDB Deposition Date: 2005-04-15 |
[edit]
=1ZDW=
| Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GSPP and Flaviolin
|
| Kuzuyama, T., Noel, J.P., Richard, S.B. |
| hetic prenylation of aromatic natural products. |
| Nature, v435 : pp.983-987, 2005 |
| PDB Code: 1ZDW |
| PDB Deposition Date: 2005-04-15 |
[edit]
=1ZCW=
| Co-crystal structure of Orf2 an aromatic prenyl transferase from Streptomyces sp. strain CL190 complexed with GPP
|
| Kuzuyama, T., Noel, J.P., Richard, S.B. |
| Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products. |
| Nature, v435 : pp.983-987, 2005 |
| PDB Code: 1ZCW |
| PDB Deposition Date: 2005-04-13 |
[edit]
=1ZB6=
| Co-Crystal Structure of ORF2 an Aromatic Prenyl Transferase from Streptomyces sp. strain cl190 complexed with GSPP and 1,6-dihydroxynaphtalene
|
| Kuzuyama, T., Noel, J.P., Richard, S.B. |
| Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products. |
| Nature, v435 : pp.983-987, 2005 |
| PDB Code: 1ZB6 |
| PDB Deposition Date: 2005-04-07 |
[edit]
=1YUE=
| Bacteriophage T4 capsid vertex protein gp24
|
| Fokine, A., Leiman, P.G., Shneider, M.M., Ahvazi, B., Boeshans, K.M., Steven, A.C., Black, L.W., Mesyanzhinov, V.V., Rossmann, M.G. |
| Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry. |
| Proc.Natl.Acad.Sci.Usa, 102: 7163-7168, 2005 |
| PDB Code: 1YUE |
| PDB Deposition Date: 2005-02-14 |
[edit]
=1YRR=
| Crystal Structure Of The N-Acetylglucosamine-6-Phosphate Deacetylase From Escherichia Coli K12 at 2.0 A Resolution
|
| Ferreira, F.M., Aparicio, R., Mendoza-Hernandez, G., Calcagno, M.L., Oliva, G. |
| Structural analysis of N-acetylglucosamine-6-phosphate deacetylase apoenzyme from Escherichia coli. |
| J.Mol.Biol., v359: pp.308-321, 2006 |
| PDB Code: 1YRR |
| PDB Deposition Date: 2005-02-04 |
[edit]
=1YMM=
| TCR/HLA-DR2b/MBP-peptide complex
|
| Hahn, M., Nicholson, M.J., Pyrdol, J., Wucherpfennig, K.W. |
| Unconventional topology of self peptide-major histocompatibility complex binding by a human autoimmune T cell receptor. |
| NAT.IMMUNOL., v6 : pp.490-496, 2005 |
| PDB Code: 1YMM |
| PDB Deposition Date: 2005-01-21 |
[edit]
+1YG2+
| Structure of the Vibrio cholerae virulence activator AphA
|
| De Silva, R.S., Kovacikova, G., Lin, W., Taylor, R.T., Skorupski, K., Kull, F.J. |
| Crystal structure of the virulence gene activator AphA from Vibrio cholerae reveals it is a novel member of the winged helix transcription factor superfamily |
| J.Biol.Chem., v280 : pp 13779-13783, 2005 |
| PDB Code: 1YG2 |
| PDB Deposition Date: 2005-01-04 |
