PDB (2006)
From X6AWiki
Other Years: 2008 | 2007 | 2006 (1, 2) | 2005 | 2004 | 2003
[edit]
-2ODJ-
| Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa
|
| Biswas, S., van den Berg, B. |
| Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa |
| Nat.Struct.Mol.Biol. 14: 1108-1109, 2007 |
| PDB Code: 2ODJ |
| PDB Deposition Date: 2006-12-22 |
[edit]
-2OD9-
| Structural Basis for Nicotinamide Inhibition and Base Exchange in Sir2 Enzymes
|
| Marmorstein, R., Sanders, B.D. |
| Structural basis for nicotinamide inhibition and base exchange in sir2 enzymes. |
| Mol.Cell 25: 463-472, 2007 |
| PDB Code: 2OD9 |
| PDB Deposition Date: 2006-12-21 |
[edit]
-2OD7-
| Crystal Structure of yHst2 bound to the intermediate analogue ADP-HPD, and and aceylated H4 peptide
|
| Marmorstein, R., Sanders, B.D. |
| Structural basis for nicotinamide inhibition and base exchange in sir2 enzymes. |
| Mol.Cell 25: 463-472, 2007 |
| PDB Code: 2OD7 |
| PDB Deposition Date: 2006-12-21 |
[edit]
-2OD2-
| Crystal Structure of yHst2 I117F mutant bound to carba-NAD+ and an acetylated H4 peptide
|
| Marmorstein, R., Sanders, B.D. |
| Structural basis for nicotinamide inhibition and base exchange in sir2 enzymes. |
| Mol.Cell 25: 463-472, 2007 |
| PDB Code: 2OD2 |
| PDB Deposition Date: 2006-12-21 |
[edit]
=2OB3=
| Structure of Phosphotriesterase mutant H257Y/L303T
|
| Kim, J., Ramagopal, U.A., Tsai, P., Raushel, F.M., Almo, S.C. |
| Structure of Phosphotriesterase mutant H257Y/L303T. |
| TO BE PUBLISHED |
| PDB Code: 2OB3 |
| PDB Deposition Date: 2006-12-18 |
[edit]
+2O4M+
| Structure of Phosphotriesterase mutant I106G/F132G/H257Y
|
| Kim, J., Ramagopal, U.A., Tsai, P., Raushel, F.M., Almo, S.C. |
| Structure of Phosphotriesterase mutant I106G/F132G/H257Y |
| TO BE PUBLISHED |
| PDB Code: 2O4M |
| PDB Deposition Date: 2006-12-18 |
[edit]
--2O71--
| Crystal structure of RAIDD DD
|
| Wu, H., Park, H. |
| Crystal Structure of RAIDD Death Domain Implicates Potential Mechanism of PIDDosome Assembly |
| J.Mol.Biol. v357: pp.358-364,2006 |
| PDB Code: 2O71 |
| PDB Deposition Date: 2006-12-09 |
[edit]
=2O5W=
| Structure of the E. coli dihydroneopterin triphosphate pyrophosphohydrolase in complex with Sm+3 and pyrophosphate
|
| Gabelli, S.B., Bianchet, M.A., Amzel, L.M. |
| Structure and Function of the E. coli Dihydroneopterin Triphosphate Pyrophosphatase: A Nudix Enzyme Involved in Folate Biosynthesis |
| Structure 15: 1014-1022 |
| PDB Code: 2O5W |
| PDB Deposition Date: 2006-12-06 |
[edit]
=2O1C=
| Structure of the E. coli dihydroneopterin triphosphate pyrophosphohydrolase
|
| Gabelli, S.B., Bianchet, M.A., Amzel, L.M. |
| Structure and Function of the E. coli Dihydroneopterin Triphosphate Pyrophosphatase: A Nudix Enzyme Involved in Folate Biosynthesis |
| Structure 15: 1014-1022 |
| PDB Code: 2O1C |
| PDB Deposition Date: 2006-11-28 |
| Article Link: |
[edit]
+2NZG+
| Novel binding site identified in a hybrid between cholera toxin and heat-labile enterotoxin, 1.9A crystal structure reveals the details
|
| Holmner, A., Lebens, M., Teneberg, S., Angstrom, J., Okvist, M., Krengel, U. |
| Novel binding site identified in a hybrid between cholera toxin and heat-labile enterotoxin, 1.9A crystal structure reveals the details (2004) |
| Structure 12: 1655-1667 |
| PDB Code: 2NZG |
| PDB Deposition Date: 2006-11-23 |
[edit]
+2NTT+
| Crystal Structure of SEK
|
| Gunther, S., Varma, A.K., Moza, B., Sundberg, E.J. |
| A novel loop domain in superantigens extends their T cell receptor recognition site.(2007) |
| J.Mol.Biol. 371: 210-221 |
| PDB Code: 2NTT |
| PDB Deposition Date: 2006-11-08 |
[edit]
+2NTS+
| Crystal Structure of SEK-hVb5.1
|
| Gunther, S., Varma, A.K., Moza, B., Sundberg, E.J. |
| A novel loop domain in superantigens extends their T cell receptor recognition site.(2007) |
| J.Mol.Biol. 371: 210-221 |
| PDB Code: 2NTS |
| PDB Deposition Date: 2006-11-08 |
[edit]
--2NQL--
| Crystal structure of a member of the enolase superfamily from Agrobacterium tumefaciens
|
| Patskovsky, Y., Ramagopal, U., Toro, R., Sauder, J.M., Dickey, M., Adams, J.M., Ozyurt, S., Wasserman, S.R., Gerlt, J., Burley, S.K., Almo, S.C. |
| Crystal Structure of Enolase from Agrobacterium Tumefaciens C58 |
| TO BE PUBLISHED |
| PDB Code: 2NQL |
| PDB Deposition Date: 2006-10-31 |
[edit]
+2J71+
| ALPHA-GLUCAN RECOGNITION BY A FAMILY 41 CARBOHYDRATE-BINDING MODULE FROM THERMOTOGA MARITIMA PULLULANASE PULA
|
| Lammerts Van Bueren, A., Boraston, A.B. |
| The Structural Basis of Alpha-Glucan Recognition by a Family 41 Carbohydrate-Binding Module from Thermotoga Maritima |
| J.Mol.Biol. 365: 555, 2007 |
| PDB Code: 2J71 |
| PDB Deposition Date : 2006-10-05 |
[edit]
+2J72+
| ALPHA-GLUCAN RECOGNITION BY A FAMILY 41 CARBOHYDRATE-BINDING MODULE FROM THERMOTOGA MARITIMA PULLULANASE PULA
|
| Lammerts Van Bueren, A., Boraston, A.B. |
| The Structural Basis of Alpha-Glucan Recognition by a Family 41 Carbohydrate-Binding Module from Thermotoga Maritima |
| J.Mol.Biol. 365: 555, 2007 |
| PDB Code: 2J72 |
| PDB Deposition Date: 2006-10-05 |
[edit]
+2J73+
| ALPHA-GLUCAN RCOGNITION BY A FAMILY 41 CARBOHYDRATE-BINDING MODULE FROM THERMOTOGA MARITIMA PULLULANASE PULA
|
| Lammerts Van Bueren, A., Boraston, A.B. |
| The Structural Basis of Alpha-Glucan Recognition by a Family 41 Carbohydrate-Binding Module from Thermotoga Maritima |
| J.Mol.Biol. 365: 555, 2007 |
| PDB Code: 2J73 |
| PDB Deposition Date: 2006-10-05 |
[edit]
+2J1F+
| CHARACTERIZATION OF A FAMILY 32 CBM
|
| Ficko-Blean, E., Boraston, A.B. |
| The Interaction of a Carbohydrate-Binding Module from a Clostridium Perfringens N-Acetyl-Beta-Hexosaminidase with its Carbohydrate Receptor |
| J.Biol.Chem. v281: 37748-37757, 2006 |
| PDB Code: 2J1F |
| PDB Deposition Date: 2006-08-10 |
[edit]
+2J1E+
| HIGH RESOLUTION CRYSTAL STRUCTURE OF CBM32 FROM A N-ACETYL-BETA-HEXOSAMINIDASE IN COMPLEX WITH LACNAC
|
| Ficko-Blean, E., Boraston, A.B. |
| The Interaction of a Carbohydrate-Binding Module from a Clostridium Perfringens N-Acetyl-Beta-Hexosaminidase with its Carbohydrate Receptor |
| J.Biol.Chem. v281: 37748-37757 , 2006 |
| PDB Code: 2J1E |
| PDB Deposition Date: 2006-08-10 |
[edit]
+2J1A+
| STRUCTURE OF CBM32 FROM CLOSTRIDIUM PERFRINGENS BETA-N-ACETYLHEXOSAMINIDASE GH84C IN COMPLEX WITH GALACTOSE
|
| Ficko-Blean, E., Boraston, A.B. |
| The Interaction of a Carbohydrate-Binding Module from a Clostridium Perfringens N-Acetyl-Beta-Hexosaminidase with its Carbohydrate Receptor |
| J.Biol.Chem. v281: 37748-37757, 2006 |
| PDB Code: 2J1A |
| PDB Deposition Date: 2006-08-09 |
[edit]
=2IKQ=
| Crystal structure of mouse Sts-1 PGM domain in complex with phosphate.
|
| Chen, Y., Nassar, N. |
| A Phosphatase Activity of Sts-1 Contributes to the Suppression of TCR Signaling |
| Mol.Cell, 27: 486-497, 2007 |
| PDB Code: 2IKQ |
| PDB Deposition Date: 2006-10-02 |
[edit]
=2IG0=
| Structure of 53BP1/methylated histone peptide complex
|
| Mer, G. |
| Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair. |
| Cell(Cambridge,Mass.) v127:pp. 1361-1373, 2006 |
| PDB Code: 2IG0 |
| PDB Deposition Date: 2006-09-22 |
[edit]
=2IC8=
| Crystal structure of GlpG
|
| Ha, Y. |
| Crystal Structure of a Rhomboid Family Intramembrane Protease |
| Nature, v444 : pp.179-183, 2006 |
| PDB Code: 2IC8 |
| PDB Deposition Date: 2006-09-12 |
[edit]
+2I7F+
| Sphingomonas yanoikuyae B1 ferredoxin
|
| Ramaswamy, S., Brown, E.N. |
| Structural investigations of the ferredoxin and terminal oxygenase components of the biphenyl 2,3-dioxygenase from Sphingobium yanoikuyae B1.(2007) |
| Bmc Struct.Biol. 7: 10-10 |
| PDB Code: 2I7F |
| PDB Deposition Date: 2006-08-30 |
[edit]
--2I39--
| Crystal structure of Vaccinia virus N1L protein
|
| Aoyagi, M., Aleshin, A.E., Stec, B., Liddington, R.C. |
| Vaccinia virus N1L protein resembles a B cell lymphoma-2 (Bcl-2) family protein |
| Protein Sci. 16: 118-124 |
| PDB Code: 2I39 |
| PDB Deposition Date : 2006-08-17 |
[edit]
+2I32+
| Structure of a human ASF1a-HIRA complex and insights into specificity of histone chaperone complex assembly
|
| Marmorstein, R., Tang, Y. |
| Structure of a human ASF1a-HIRA complex and insights into specificity of histone chaperone complex assembly. |
| Nat.Struct.Mol.Biol., v13 : pp.921-929, 2006 |
| PDB Code: 2I32 |
| PDB Deposition Date: 2006-08-17 |
[edit]
=2HZV=
| NikR-operator DNA complex
|
| Schreiter, E.R., Drennan, C.L. |
| NikR-operator complex structure and the mechanism of repressor activation by metal ions. |
| Proc.Natl.Acad.Sci.Usa, v103: pp.13676-13681, 2006 |
| PDB Code: 2HZV |
| PDB Deposition Date: 2006-08-9 |
[edit]
=2HZA=
| Nickel-bound full-length Escherichia coli NikR
|
| Schreiter, E.R., Drennan, C.L. |
| NikR-operator complex structure and the mechanism of repressor activation by metal ions. |
| Proc.Natl.Acad.Sci.Usa, v103: pp.13676-13681, 2006 . |
| PDB Code: 2HZA |
| PDB Deposition Date: 2006-08-08 |
[edit]
+2HYZ+
| Crystal structure of an 8 repeat consensus TPR superhelix (orthorombic crystal form)
|
| Kajander, T., Cortajarena, A.L., Regan, L. |
| Structure and stability of a consensus TPR superhelix |
| TO BE PUBLISHED |
| PDB Code: 2HYZ |
| PDB Deposition Date: 2006-08-08 |
[edit]
--2HYV--
| Human Annexin A2 with heparin hexasaccharide bound
|
| Shao, C., Head, J.F., Seaton, B.A. |
| Crystallographic analysis of calcium-dependent heparin binding to annexin A2. |
| J.Biol.Chem. , v281: pp.31689-31695, 2006 |
| PDB Code: 2HYV |
| PDB Deposition Date: 2006-08-7 |
[edit]
+2HXM+
| Complex of UNG2 and a small Molecule synthetic Inhibitor
|
| Bianchet, M.A., Krosky, D.J., Ghung, S., Seiple, L., Amzel, L.M., Stivers,J.T. |
| Mimicking damaged DNA with a small molecule inhibitor of human UNG2 |
| Nucleic Acids Res. v34: pp.5872-5879 , 2006 |
| PDB Code: 2HXM |
| PDB Deposition Date: 2006-08-03 |
[edit]
-2HXG-
| Crystal Structure of Mn2+ bound ECAI
|
| Manjasetty, B.A., Burley, S.K., New York Structural GenomiX Research Consortium (NYSGXRC) |
| Crystal Structure of Mn2+-bound Escherichia coli L-arabinose Isomerase (ECAI) and Implications in Protein Catalytic Mechanism and Thermo-Stability. |
| The Journal of Young Investigators 17:1-1 |
| PDB Code: 2HXG |
| PDB Deposition Date: 2006-08-03 |
[edit]
=2HVL=
| Crystal structure of the HePTP catalytic domain C270S mutant
|
| Page, R., Critton, D., Ragusa, M. |
| Substrate Trapping Mutants of HePTP. |
| , TO BE PUBLISHED |
| PDB Code: 2HVL |
| PDB Deposition Date: 2006-07-29 |
[edit]
=2HTL=
| Structure of the Escherichia coli ClC chloride channel Y445F mutant and Fab complex
|
| Accardi, A., Lobet, S., Williams, C., Miller, C., Dutzler, R. |
| Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger |
| J.Mol.Biol., 362: 691-699 |
| PDB Code: 2HTL |
| PDB Deposition Date: 2006-07-26 |
[edit]
=2HTK=
| Structure of the Escherichia coli ClC chloride channel Y445A mutant and Fab complex
|
| Accardi, A., Lobet, S., Williams, C., Miller, C., Dutzler, R. |
| Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger |
| J.Mol.Biol., 362: 691-699 |
| PDB Code: 2HTK |
| PDB Deposition Date: 2006-07-26 |
[edit]
=2HT4=
| Structure of the Escherichia coli ClC chloride channel Y445W mutant and Fab complex
|
| Accardi, A., Lobet, S., Williams, C., Miller, C., Dutzler, R. |
| Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger |
| J.Mol.Biol., 362: 691-699 |
| PDB Code: 2HT4 |
| PDB Deposition Date: 2006-07-25 |
[edit]
=2HT3=
| Structure of the Escherichia coli ClC chloride channel Y445L mutant and Fab complex
|
| Accardi, A., Lobet, S., Williams, C., Miller, C., Dutzler, R. |
| Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger |
| J.Mol.Biol., 362: 691-699 |
| PDB Code: 2HT3 |
| PDB Deposition Date: 2006-07-25 |
[edit]
=2HT2=
| Structure of the Escherichia coli ClC chloride channel Y445H mutant and Fab complex
|
| Accardi, A., Lobet, S., Williams, C., Miller, C., Dutzler, R. |
| Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger |
| J.Mol.Biol., 362: 691-699 |
| PDB Code: 2HT2 |
| PDB Deposition Date: 2006-07-25 |
[edit]
=2HLF=
| Structure of the Escherichis coli ClC chloride channel Y445E mutant and Fab complex
|
| Accardi, A., Lobet, S., Williams, C., Miller, C., Dutzler, R. |
| Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger |
| J.Mol.Biol., 362: 691-699 |
| PDB Code: 2HLF |
| PDB Deposition Date: 2006-07-29 |
[edit]
+2HHL+
| Crystal structure of the human small CTD phosphatase 3 isoform 1
|
| Malashkevich, V.N.., Toro, R., Ramagopal, U., Sauder, J.M., Schwinn, K.D., Thompson, D.A., Rutter, M.E., Dickey, M., Groshong, C., Bain, K.T., Adams, J.M., Reyes, C., Rooney, I., Powell, A., Boice, A., Gheyi, T., Ozyurt, S., Atwell, S., Wasserman, S.R., Emtage, S., Burley, S.K., Almo, S.C., New York Structural GenomiX Research Consortium (NYSGXRC) |
| Structural genomics of protein phosphatases |
| J Struct Funct Genomics 8: 121-140,2007 |
| PDB Code: 2HHL |
| PDB Deposition Date: 2006-06-28 |
[edit]
--2HC9--
| Structure of Caenorhabditis elegans leucine aminopeptidase-zinc complex (LAP1)
| |
| Zhan, C., Patskovsky, Y., Wengerter, B.C., Ramagopal, U., Milstein, S., Vidal, M., Almo, S.C., Burley, S.K., New York Structural GenomiX Research Consortium (NYSGXRC) | |
| Crystal Structure and Function of Caenorhabditis Elegans Leucine Aminopeptidase | |
| To be Published | |
| PDB Code: 2HC9 | |
| PDB Deposition Date : 2006-06-28 |
[edit]
=2H2U=
| Crystal structure of the E130Y mutant of human soluble calcium-activated nucleotidase (SCAN) with calcium ion
|
| Yang, M., Horii, K., Herr, A.B., Kirley, T.L. |
| Calcium-dependent dimerization of human soluble calcium activated nucleotidase: characterization of the dimer interface. |
| J.Biol.Chem., v281: pp.28307-28317, 2006 |
| PDB Code: 2H2U |
| PDB Deposition Date: 2006-05-19 |
[edit]
=2H2N=
| Crystal structure of human soluble calcium-activated nucleotidase (SCAN) with calcium ion
|
| Yang, M., Horii, K., Herr, A.B., Kirley, T.L. |
| Calcium-dependent dimerization of human soluble calcium activated nucleotidase: characterization of the dimer interface. |
| J.Biol.Chem., v281: pp.28307-28317, 2006 |
| PDB Code: 2H2N |
| PDB Deposition Date: 2006-05-19 |
[edit]
=2H0Q=
| Crystal Structure of the PGM domain of the Suppressor of T-Cell receptor (Sts-1)
|
| Nassar, N., Ford, B., Carpino, N. |
| A phosphatase activity of Sts-1 contributes to the suppression of TCR signaling. |
| Mol.Cell 27: 486-497, 2007 |
| PDB Code: 2H0Q |
| PDB Deposition Date: 2006-05-15 |
[edit]
+2GYD+
| Complex of equine apoferritin with the H-diaziflurane photolabeling reagent
|
| Loll, P.J., Rossi, M.J., Eckenhoff, R. |
| Photoactive analogues of the haloether anesthetics provide high-resolution features from low-affinity interactions. |
| Acs Chem.Biol. 1: 377-384, 2006 |
| PDB Code: 2GYD |
| PDB Deposition Date: 2006-05-09 |
[edit]
+2GT4+
| Crystal Structure of the Y103F mutant of the GDP-mannose mannosyl hydrolase in complex with GDP-mannose and MG+2
|
| Gabelli, S.B., Bianchet, M.A., Azurmendi, H.F., Mildvan, A.S., Amzel, L.A. |
| X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction. |
| Biochemistry, v45: pp.11290-11303, 2006 |
| PDB Code: 2GT4 |
| PDB Deposition Date: 2006-04-27 |
[edit]
+2GT2+
| Structure of the E. coli GDP-mannose mannosyl hydrolase
|
| Gabelli, S.B., Bianchet, M.A., Azurmendi, H.F., Mildvan, A.S., Amzel, L.A. |
| X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction. |
| Biochemistry, v45: pp.11290-11303, 2006 |
| PDB Code: 2GT2 |
| PDB Deposition Date: 2006-04-27 |
[edit]
--2GRX--
| Crystal structure of TonB in complex with FhuA, E. coli outer membrane receptor for ferrichrome
|
| Pawelek, P.D., Allaire, M., Coulton, J.W. |
| Structure of TonB in complex with FhuA, E. coli outer membrane receptor. |
| Science v312: pp.1399-1402, 2006 |
| PDB Code: 2GRX |
| PDB Deposition Date: 2006-04-25 |
[edit]
--2GI7--
| Crystal structure of human platelet Glycoprotein VI (GPVI)
|
| Horii, K., Kahn, M.L., Herr, A.B. |
| Structural basis for platelet collagen responses by the immune-type receptor glycoprotein VI. |
| Blood 108: 936-942, 2006 |
| PDB Code: 2GI7 |
| PDB Deposition Date: 2006-03-28 |
