PDB (2007)-2

From X6AWiki

Other Years: 2008 | 2007 (1, 2, 3) | 2006 | 2005 | 2004 | 2003


Contents

+2R89+

2R89 -47b
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2R89 -47b
Crystal structure of the long-chain fatty acid transporter FadL mutant delta N3
Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.
Membrane transport of hydrophobic compounds by lateral diffusion
TO BE PUBLISHED

PDB Code: 2R89
PDB Deposition Date: 2007-09-10

+2R88+

2R88 -47b
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2R88 -47b
Crystal structure of the long-chain fatty acid transporter FadL mutant delta S3 kink
Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.
Membrane transport of hydrophobic compounds by lateral diffusion
TO BE PUBLISHED

PDB Code: 2R88
PDB Deposition Date: 2007-09-10

+2R4P+

2R4P -47b
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2R4P -47b
Crystal structure of the long-chain fatty acid transporter FadL mutant G212E
Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.
Membrane transport of hydrophobic compounds by lateral diffusion
TO BE PUBLISHED

PDB Code: 2R4P
PDB Deposition Date: 2007-08-31

+2R4O+

2R4O -47b
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2R4O -47b
Crystal structure of the long-chain fatty acid transporter FadL mutant delta NPA
Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.
Membrane transport of hydrophobic compounds by lateral diffusion
TO BE PUBLISHED

PDB Code: 2R4O
PDB Deposition Date: 2007-08-31

+2R4N+

2R4N -47b
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2R4N -47b
Crystal structure of the long-chain fatty acid transporter FadL mutant N33A
Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.
Membrane transport of hydrophobic compounds by lateral diffusion
TO BE PUBLISHED

PDB Code: 2R4N
PDB Deposition Date: 2007-08-31

+2R4L+

2R4L -47b
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2R4L -47b
Crystal structure of the long-chain fatty acid transporter FadL mutant P34A
Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B.
Membrane transport of hydrophobic compounds by lateral diffusion
TO BE PUBLISHED

PDB Code: 2R4L
PDB Deposition Date: 2007-08-31

+2R4G+

2R4G -209
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2R4G -209
The high resolution structure of the RNA-binding domain of telomerase
Rouda, S., Skordalakes, E.
Structure of the RNA-Binding Domain of Telomerase: Implications for RNA Recognition and Binding
Structure v15 : pp. 1403-1412, 2007

PDB Code: 2R4G
PDB Deposition Date: 2007-08-31

=2QZE=

2QZE -153_SKIb
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2QZE -153_SKIb
Monoclinic Mimivirus Capping Enzyme Triphosphatase.
Benarroch, D., Smith, P., Shuman, S.
Characterization of a trifunctional mimivirus mRNA capping enzyme and crystal structure of the RNA triphosphatase domain.
Structure 16: 501-51, 2008

PDB Code: 2QZE
PDB Deposition Date: 2007-08-16

=2QTK=

2QTK -110b
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2QTK -110b
Crystal Structure of the outer membrane protein opdK from Pseudomonas aeruginosa
Biswas, S., Van den Berg, B.
Crystal Structure of the Outer Membrane Protein OpdK from Pseudomonas aeruginosa.
Structure 16: 1027-1035, 2008

PDB Code: 2QTK
PDB Deposition Date: 2007-08-02

+2QTE+

2QTE -UNKNOWN
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2QTE -UNKNOWN
Crystal Structure of Novel Immune-Type Receptor 11 Extracellular Fragment Mutant N30D
Ostrov, D.A., Hernandez Prada, J.A., Haire, R.N., Cannon, J.P., Magis, A.T., Bailey, K., Litman, G.W.
Crystal Structure of Novel Immune-Type Receptor 11 Extracellular Fragment Mutant N30D
TO BE PUBLISHED

PDB Code: 2QTE
PDB Deposition Date: 2007-08-01

=2QT7=

2QT7 -154
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2QT7 -154
Crystallographic structure of the mature ectodomain of the human receptor-type protein-tyrosine phosphatase IA-2 at 1.30 Angstroms
Primo, M.E., Klinke, S., Sica, M.P., Goldbaum, F.A., Jakoncic, J., Poskus, E., Ermacora, M.R.
Structure of the mature ectodomain of the human receptor-type protein-tyrosine phosphatase IA-2
J.Biol.Chem. 283: 4674-4681, 2007

PDB Code: 2QT7
PDB Deposition Date: 2007-08-01

+2QQQ+

2QQQ -UNKNOWN
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2QQQ -UNKNOWN
Crystal Structure of Novel Immune-Type Receptor 11 Extracellular Fragment from Ictalurus punctatus
Ostrov, D.A., Hernandez-Prada, J.A., Haire, R.N., Cannon, J.P., Magis, A.T., Bailey, K., Litman, G.W.
Crystal Structure of Novel Immune-Type Receptor 11 Extracellular Fragment from Ictalurus punctatus
TO BE PUBLISHED

PDB Code: 2QQQ
PDB Deposition Date: 2007-07-26

+2QND+

2QND -107
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2QND -107
Crystal Structure of the KH1-KH2 domains from human Fragile X Mental Retardation Protein
Valverde, Roberto, Pozdnyakova, Irina, Kajander, Tommi, Venkatraman,

Janani, and Regan, Lynne

Fragile X Mental Retardation Syndrome: Structure of the KH1-KH2 Domains of Fragile X Mental Retardation Protein
Structure v15 : pp. 1090-1098, 2007

PDB Code: 2QND
PDB Deposition Date: 2007-07-18

+2QJD+

2QJD -UNKNOWN
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2QJD -UNKNOWN
Crystal Structure of Novel Immune-Type Receptor 10 Extracellular Fragment Mutant N30D
Ostrov, D.A., Hernandez Prada, J.A., Haire, R.N., Cannon, J.P., Magis, A.T., Bailey, K., Litman, G.W.
Novel Immune-Type Receptors Mediate Allogeneic Recognition
TO BE PUBLISHED

PDB Code: 2QJD
PDB Deposition Date: 2007-07-06

+2QJ7+

2QJ7 -63
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2QJ7 -63
PYP ultra-high resolution of a bacterial photoreceptor
Coureux, P.D., Fan, Z.P., Stojanoff, V., Genick, U.K.
Picometer-scale conformational heterogeneity separates functional from nonfunctional States of a photoreceptor protein.
Structure 16: 863-872, 2008

PDB Code: 2QJ7
PDB Deposition Date: 2007-07-06

+2QJ5+

2QJ5 -63
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2QJ5 -63
PYP ultra-high resolution of a bacterial photoreceptor
Coureux, P.D., Fan, Z.P., Stojanoff, V., Genick, U.K.
Picometer-scale conformational heterogeneity separates functional from nonfunctional States of a photoreceptor protein.
Structure 16: 863-872, 2008

PDB Code: 2QJ5
PDB Deposition Date: 2007-07-06

+2QHL+

2QHL -UNKNOWN
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2QHL -UNKNOWN
Crystal Structure of Novel Immune-Type Receptor 10 Extracellular Fragment from Ictalurus punctatus
Ostrov, D.A., Hernandez Prada, J.A., Haire, R.N., Cannon, J.P., Magis, A.T., Bailey, K., Litman, G.W.
Crystal Structure of Novel Immune-Type Receptor 10 Extracellular Fragment from Ictalurus punctatus
TO BE PUBLISHED

PDB Code: 2QHL
PDB Deposition Date: 2007-07-02

-2QFJ-

2QFJ -163
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2QFJ -163
Crystal Structure of First Two RRM Domains of FIR Bound to ssDNA from a Portion of FUSE
Crichlow, G.V., Yang, Y., Fan, C., Lolis, E., Braddock, D.
Dimerization of FIR upon FUSE DNA binding suggests a mechanism of c-myc inhibition
EMBO J. 27: 277-289, 2007

PDB Code: 2QFJ
PDB Deposition Date: 2007-06-27

=2QDP=

2QDM -150
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2QDM -150
Crystal structure of the HePTP catalytic domain C270S mutant crystallized in ammonium acetate
Critton, D.A., Tortajada, A., Page, R.
Structural basis of substrate recognition by HePTP
To be Published

PDB Code: 2QDP
PDB Deposition Date: 2007-06-21

=2QDM=

2QDM -150
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2QDM -150
Crystal structure of the HePTP catalytic domain C270S/D236A/Q314A mutant
Critton, D.A., Tortajada, A., Page, R.
Structural basis of substrate recognition by HePTP
To be Published

PDB Code: 2QDM
PDB Deposition Date: 2007-06-21

=2QDC=

2QDC -150
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2QDC -150
Crystal structure of the HePTP catalytic domain D236A mutant
Critton, D.A., Tortajada, A., Page, R.
Structural basis of substrate recognition by HePTP
To be Published

PDB Code: 2QDC
PDB Deposition Date: 2007-06-20

-2Q99-

2Q99 -168
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2Q99 -168
Crystal Structure of Saccharopine Dehydrogenase from Saccharomyces cerevisiae
Berghuis, A.M., Burk, D.L.
Structural Studies of the Final Enzyme in the alpha-Aminoadipate Pathway-Saccharopine Dehydrogenase from Saccharomyces cerevisiae
J.Mol.Biol. 373: 745-754, 2007

PDB Code: 2Q99
PDB Deposition Date: 2007-06-12

+2Q91+

2Q91 -153_AECOMb
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2Q91 -153_AECOMb
Structure of the Ca2+-Bound Activated Form of the S100A4 Metastasis Factor
Malashkevich, V.N., Knight, D., Ramagopal, U.A., Almo, S.C., Bresnick, A.R.
Structure of Ca(2+)-Bound S100A4 and Its Interaction with Peptides Derived from Nonmuscle Myosin-IIA.
Biochemistry 47: 5111-5126, 2008

PDB Code: 2Q91
PDB Deposition Date: 2007-06-12

=2Q7O=

2Q7O -153_AECOMe
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2Q7O -153_AECOMe
Structure of human purine nucleoside phosphorylase in complex with L-Immucillin-H
Rinaldo-Matthis, A., Almo, S.C., Schramm, V.L.
L-Enantiomers of transition state analogue inhibitors bound to human purine nucleoside phosphorylase.
J.Am.Chem.Soc. 130: 842-844, 2008

PDB Code: 2Q7O
PDB Deposition Date: 2007-06-07

=2Q6W=

2Q6W -59
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2Q6W -59
The structure of HLA-DRA, DRB3*0101 (DR52a) with bound platelet integrin peptide associated with fetal and neonatal alloimmune thrombocytopenia
Parry, C.S., Gorski, J., Stern, L.J.
Crystallographic Structure of the Human Leukocyte Antigen DRA, DRB3*0101: Models of a Directional Alloimmune Response and Autoimmunity
J.Mol.Biol. v371: pp. 435-446, 2007

PDB Code: 2Q6W
PDB Deposition Date: 2007-06-05

+2Q5D+

2Q5D -65
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2Q5D -65
Crystal Structure of Human Importin Beta bound to the Snurportin1 IBB-domain second crystal form
Mitrousis, G., Cingolani, G.
Molecular Basis for the Recognition of Snurportin 1 by Importin {beta}.
J.Biol.Chem. 283: 7877-7884, 2008

PDB Code: 2Q5D
PDB Deposition Date: 2007-05-31

-2POP-

2POP -114
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2POP -114
The Crystal Structure of TAB1 and BIR1 complex
Lin, S.C.
XIAP Induces NF-kappaB Activation via the BIR1/TAB1 Interaction and BIR1 Dimerization.
Mol.Cell 26: 689-702, 2007


PDB Code: 2POP
PDB Deposition Date: 2007-04-27

-2POM-

2POM -114
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2POM -114
TAB1 with manganese ion
Lin, S.C.
XIAP Induces NF-kappaB Activation via the BIR1/TAB1 Interaction and BIR1 Dimerization.
Mol.Cell 26: 689-702, 2007


PDB Code: 2POM
PDB Deposition Date: 2007-04-26

-2POI-

2POI -114
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2POI -114
Crystal structure of XIAP BIR1 domain (I222 form)
Lin, S.C.
XIAP Induces NF-kappaB Activation via the BIR1/TAB1 Interaction and BIR1 Dimerization.
Mol.Cell 26: 689-702, 2007


PDB Code: 2POI
PDB Deposition Date: 2007-04-26

+2POH+

2POH -155
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2POH -155
Structure of Phage P22 Tail Needle gp26
Olia, A.S., Cingolani, G.
Three-dimensional Structure of the Bacteriophage P22 Cell-wall Penetrating Tail Needle gp26
TO BE PUBLISHED

PDB Code: 2POH
PDB Deposition Date: 2007-04-26

+2PMU+

2PMU -94
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2PMU -94
Crystal structure of the DNA-binding domain of PhoP
Wang, S.
Structure of the DNA-binding domain of the response regulator PhoP from Mycobacterium tuberculosis
Biochemistry 46: 14751-14761, 2007

PDB Code: 2PMU
PDB Deposition Date: 2007-04-23

+2PC5+

2PC5 -61d
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2PC5 -61d
Native crystal structure analysis on Arabidopsis dUTPase
Moriyama, H., Bajaj, M.
Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana.
Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 409-411, 2007

PDB Code: 2PC5
PDB Deposition Date: 2007-03-29

+2PBX+

2PBX -108
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2PBX -108
Vibrio cholerae HapR
Kull, F.J., DeSilva, R.S., Kovacikova, G., Lin, W., Taylor, R.K., Skorupski, K.
Crystal structure of the Vibrio cholerae Quorum-Sensing Regulatory Protein HapR
J.BACTERIOL. v189 : pp. 5683-5691, 2007

PDB Code: 2PBX
PDB Deposition Date: 2007-03-29

+2PAF+

2PAF 122
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2PAF 122
Crystal Structure of the Lactose Repressor bound to anti-inducer ONPF in induced state
Stayrook, S., Rosenberg, A., Lewis, M.
Structural analysis of lac repressor bound to allosteric effectors.
J.Mol.Biol. v370 : pp. 609-619, 2007

PDB Code: 2PAF
PDB Deposition Date: 2007-03-27

+2P9O+

2P9O -61d
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2P9O -61d
Structure of dUTPase from Arabidopsis thaliana
Bajaj, M., Moriyama, H.
Structure of dUTPase from Arabidopsis thaliana
To be Published

PDB Code: 2P9O
PDB Deposition Date: 2007-03-26

+2P9H+

2P9H 122
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2P9H 122
High resolution structure of the Lactose Repressor bound to IPTG
Daber, R., Stayrook, S., Rosenberg, A., Lewis, M.
Structural analysis of lac repressor bound to allosteric effectors.
J.Mol.Biol. v370 : pp. 609-619, 2007

PDB Code: 2P9H
PDB Deposition Date: 2007-03-26

+2P8Q+

2P8Q -65
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2P8Q -65
Crystal Structure of human Importin beta bound to the Snurportin1 IBB-domain
Mitrousis, G., Cingolani, G.
Molecular Basis for the Recognition of Snurportin 1 by Importin {beta}.
J.Biol.Chem. 283: 7877-7884, 2008

PDB Code: 2P8Q
PDB Deposition Date: 2007-03-22

+2P3X+

2P3X -UNKNOWN
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2P3X -UNKNOWN
Crystal structure of Grenache (Vitis vinifera) Polyphenol Oxidase
Reyes-Grajeda, J.P., Virador, V.M., Blanco, A., Mendiola, E., Smith, G.M., Moreno, A., Whitaker, J.R.
Crystal structure and c-DNA Sequence of Grenache (Vitis vinifera) Leaf Polyphenol Oxidase
TO BE PUBLISHED

PDB Code: 2P3X
PDB Deposition Date: 2007-03-09

+2OZN+

2OZN -130
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2OZN -130
The Cohesin-Dockerin Complex of NagJ and NagH from Clostridium perfringens
Adams, J.J., Boraston, A., Smith, S.P.
Structural basis of Clostridium perfringens toxin complex formation.
Proc.Natl.Acad.Sci.Usa 105: 12194-12199, 2008

PDB Code: 2OZN
PDB Deposition Date: 2007-02-26

=2OYT=

2OYT -231
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2OYT -231
Crystal Structure of UNG2/DNA(TM)
Bianchet, M.A., Krosky D.J., Stivers, J.T, Amzel, L.M.
Enzymatic capture of an extrahelical thymine in the search for uracil in DNA.
Nature 449: 433-437


PDB Code: 2OYT
PDB Deposition Date: 2007-02-22

+2OYJ+ (WDRN)

Image:2OYJ.jpg

Structure of general anesthetic binding site on the phorbol binding C1B subdomain of protein kinase C delta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
.


PDB Code: 2OYJ
PDB Deposition Date: 2007-02-22

+2OYG+ (WDRN)

Image:2OYG.jpg

Structure of general anesthetic binding site on the phorbol binding C1B subdomain of protein kinase C delta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
.


PDB Code: 2OYG
PDB Deposition Date: 2007-02-22

+2OXV+

2OXV -234
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2OXV -234
Structure of the A138T promiscuous mutant of the EcoRI restriction endonuclease bound to its cognate recognition site.
Sapienza, P.J., Rosenberg, J.M., Jen-Jacobson, L.
Structural and thermodynamic basis for enhanced DNA binding by a promiscuous mutant EcoRI endonuclease.
Structure 15: 1368-1382

PDB Code: 2OXV
PDB Deposition Date: 2007-02-21

=2OXM=

2OXM -231
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2OXM -231
Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping
Bianchet, M.A., Krosky, D.J., Stivers J.T., Amzel, L.M.
Enzymatic capture of an extrahelical thymine in the search for uracil in DNA.
Nature 449: 433-437

PDB Code: 2OXM
PDB Deposition Date: 2007-02-20

+2OXL+

2OXL -150
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2OXL -150
Structure and Function of the E. coli Protein YmgB: a Protein Critical for Biofilm Formation and Acid Resistance.
Page, R., Peti, W., Woods, T.K., Palermino, J.M., Doshi, O.
Structure and Function of the Escherichia coli Protein YmgB: A Protein Critical for Biofilm Formation and Acid-resistance.
J.Mol.Biol. 373: 11-26

PDB Code: 2OXL
PDB Deposition Date: 2007-02-20

+2OSE+

2OSE -132
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2OSE -132
Crystal Structure of the Mimivirus Cyclophilin
Eisenmesser, E.Z., Thai, V.T., Renesto, P., Raoult, D.
Structural, biochemical, and in vivo characterization of the first virally encoded cyclophilin from the Mimivirus.
J.Mol.Biol. 378: 71-86, 2008

PDB Code: 2OSE
PDB Deposition Date: 2007-02-05

+2ON4+ (WDRN)

Image:2ON4.jpg

Structure of general anesthetic binding site on the phorbol binding C1B subdomain of protein kinase C delta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
.


PDB Code: 2ON4
PDB Deposition Date: 2007-01-23

+2OOU+ (WDRN)

Image:2OOU.jpg

Structure of general anesthetic binding site on the phorbol binding C1B subdomain of protein kinase C delta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
.


PDB Code: 2OOU
PDB Deposition Date: 2007-01-26