PDB (2008)
From X6AWiki
Other Years: 2008 (1, 2) | 2007 | 2006 | 2005 | 2004 | 2003
[edit]
+3FCK+
| Complex of UNG2 and a fragment-based design inhibitor
|
| Bianchet, M.A., Chung, S., Parker, J.B., Amzel, L.M., Stivers, J.T. |
| Impact of linker strain and flexibility in the design of a fragment-based inhibitor |
| Nat.Chem.Biol. 5: 407-413, 2009 |
| PDB Code: 3FCK |
| PDB Deposition Date: 2008-11-21 |
[edit]
+3F80+
| (S)-2-amino-6-nitrohexanoic acid binds to human arginase I through multiple nitro-metal coordination interactions in the binuclear manganese cluster. Resolution 1.60 A.
|
| Di Costanzo, L., Christianson, D.W. |
| (S)-2-amino-6-nitrohexanoic acid binds to human arginase I through multiple nitro-metal coordination interactions in the binuclear manganese cluster |
| J.Am.Chem.Soc. 130: 17254-17255, 2008 |
| PDB Code: 3F80 |
| PDB Deposition Date: 2008-11-10 |
[edit]
=3F55= (On Hold)
| Crystal structure of the native endo beta-1,3-glucanase (Hev b 2), A major allergen from hevea brasiliensis (space group P41)
|
| Fuentes-Silva, D., Munoz-Cruz, S., Mendoza-Hernandez, G., Palomares, L.A., Yepez-Mulia, L., Rodriguez-Romero, A. |
| |
| PDB Code: 3F55 |
| PDB Deposition Date: 2008-11-03 |
[edit]
+3F39+
| Apoferritin: complex with phenol
|
| Vedula, L.S., Economou, N.J., Rossi, M.J., Eckenhoff, R.G., Loll, P.J. |
| A unitary anesthetic-binding site at high resolution. |
| J.Biol.Chem. , 2009 |
| PDB Code: 3F39 |
| PDB Deposition Date: 2008-10-30 |
[edit]
+3F38+
| Apoferritin: complex with 2,6-dimethylphenol
|
| Vedula, L.S., Economou, N.J., Rossi, M.J., Eckenhoff, R.G., Loll, P.J. |
| A unitary anesthetic-binding site at high resolution. |
| J.Biol.Chem. , 2009 |
| PDB Code: 3F38 |
| PDB Deposition Date: 2008-10-30 |
[edit]
+3F37+
| Apoferritin: complex with 2,6-dimethylphenol
|
| Vedula, L.S., Economou, N.J., Rossi, M.J., Eckenhoff, R.G., Loll, P.J. |
| A unitary anesthetic-binding site at high resolution. |
| J.Biol.Chem. , 2009 |
| PDB Code: 3F37 |
| PDB Deposition Date: 2008-10-30 |
[edit]
+3F36+
| Apoferritin: complex with 2-isopropylphenol
|
| Vedula, L.S., Economou, N.J., Rossi, M.J., Eckenhoff, R.G., Loll, P.J. |
| A unitary anesthetic-binding site at high resolution. |
| J.Biol.Chem. , 2009 |
| PDB Code: 3F36 |
| PDB Deposition Date: 2008-10-30 |
[edit]
+3F35+
| Apoferritin: complex with 2,6-diethylphenol
|
| Vedula, L.S., Economou, N.J., Rossi, M.J., Eckenhoff, R.G., Loll, P.J. |
| A unitary anesthetic-binding site at high resolution. |
| J.Biol.Chem. , 2009 |
| PDB Code: 3F35 |
| PDB Deposition Date: 2008-10-30 |
[edit]
+3F34+
| Apoferritin: complex with 2,6-diethylphenol
|
| Vedula, L.S., Economou, N.J., Rossi, M.J., Eckenhoff, R.G., Loll, P.J. |
| A unitary anesthetic-binding site at high resolution. |
| J.Biol.Chem , 2009 |
| PDB Code: 3F34 |
| PDB Deposition Date: 2008-10-30 |
[edit]
+3F33+
| Apoferritin: complex with propofol
|
| Vedula, L.S., Economou, N.J., Rossi, M.J., Eckenhoff, R.G., Loll, P.J. |
| A unitary anesthetic-binding site at high resolution. |
| J.Biol.Chem. , 2009 |
| PDB Code: 3F33 |
| PDB Deposition Date: 2008-10-30 |
[edit]
+3F32+
| Horse spleen apoferritin
|
| Vedula, L.S., Economou, N.J., Rossi, M.J., Eckenhoff, R.G., Loll, P.J. |
| A unitary anesthetic-binding site at high resolution. |
| J.Biol.Chem. , 2009 |
| PDB Code: 3F32 |
| PDB Deposition Date: 2008-10-30 |
[edit]
=3F1V= (On Hold)
| E. coli Beta Sliding Clamp, 148-153 Ala Mutant
|
| Cody, V. |
| |
| PDB Code: 3F1V |
| PDB Deposition Date: 2008-10-28 |
[edit]
=3EWE=
| Crystal Structure of the Nup85/Seh1 Complex
|
| Brohawn, S.G., Leksa, N.C., Rajashankar, K.R., Schwartz, T.U. |
| Structural evidence for common ancestry of the nuclear pore complex and vesicle coats. |
| Science 322: 1369-1373, 2008 |
| PDB Code: 3EWE |
| PDB Deposition Date: 2008-10-14 |
[edit]
+3ETP+
| The crystal structure of the ligand-binding domain of the EphB2 receptor at 2.0 A resolution
|
| Goldgur, Y., Paavilainen, S., Nikolov, D.B, Himanen, J.P. |
| The crystal structure of the ligand-binding domain of the EphB2 receptor at 2.0 A resolution |
| TO BE PUBLISHED |
| PDB Code: 3ETP |
| PDB Deposition Date: 2008-10-08 |
[edit]
=3EM5= (On Hold)
| Crystal structure of a native endo beta-1,3-glucanase (Hev b 2), a major allergen from Hevea brasiliensis
|
| Fuentes-Silva, D., Munoz-Cruz, S., Yepez-Mulia, L., Mendoza-Hernandez, G., Palomares, L.A., Rodriguez-Romero, A. |
| |
| PDB Code: 3EM5 |
| PDB Deposition Date: 2008-09-23 |
[edit]
+3EJ6+
| Neurospora Crassa Catalase-3 Crystal Structure
|
| Diaz, A., Valdes, V.-J., Rudino-Pinera, E., Horjales, E., Hansberg, W. |
| Structure-Function Relationships in Fungal Large-Subunit Catalases |
| J.Mol.Biol. 386: 218-232,2009 |
| PDB Code: 3EJ6 |
| PDB Deposition Date: 2008-09-17 |
[edit]
+3EG6+
| Structure of WDR5 bound to MLL1 peptide
|
| Patel, A., Dharmarajan, V., Cosgrove, M.S. |
| Structure of WDR5 bound to Mixed Lineage Leukmemia protein-1 peptide |
| TO BE PUBLISHED |
| PDB Code: 3EG6 |
| PDB Deposition Date: 2008-09-10 |
[edit]
+3EGH+ (On Hold)
| Crystal structure of a complex between Protein Phosphatase 1 alpha (PP1), the PP1 binding and PDZ domains of Spinophilin and the small natural molecular toxin Nodularin-R
|
| Ragusa, M.J., Page, R., Peti, W. |
| |
| PDB Code: 3EGH |
| PDB Deposition Date: 2008-09-10 |
[edit]
+3EGG+ (On Hold)
| Crystal structure of a complex between Protein Phosphatase 1 alpha (PP1) and the PP1 binding and PDZ domains of Spinophilin
|
| Ragusa, M.J., Page, R., Peti, W. |
| |
| PDB Code: 3EGG |
| PDB Deposition Date: 2008-09-10 |
[edit]
+3E7B+
| Crystal Structure of Protein Phosphatase-1 Bound to the natural toxin inhibitor Tautomycin
|
| Kelker, M.S., Page, R., Peti, W. |
| Crystal Structures of Protein Phosphatase-1 Bound to Nodularin-R and Tautomycin: Novel Scaffolds for Structure Based Drug Design of Serine/Threonine Phosphatase Inhibitors |
| TO BE PUBLISHED |
| PDB Code: 3E7B |
| PDB Deposition Date: 2008-08-18 |
[edit]
+3E7A+
| Crystal Structure of Protein Phosphatase-1 Bound to the natural toxin Nodularin-R
|
| Kelker, M.S., Page, R., Peti, W. |
| Crystal Structures of Protein Phosphatase-1 Bound to Nodularin-R and Tautomycin: Novel Scaffolds for Structure Based Drug Design of Serine/Threonine Phosphatase Inhibitors |
| TO BE PUBLISHED |
| PDB Code: 3E7A |
| PDB Deposition Date: 2008-08-18 |
[edit]
=3DWN=
| Crystal structure of the long-chain fatty acid transporter FadL mutant A77E/S100R
|
| Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B. |
| Transmembrane passage of hydrophobic compounds through a protein channel wall. |
| Nature 458: 367-370, 2009 |
| PDB Code: 3DWN |
| PDB Deposition Date: 2008-07-22 |
[edit]
=3DWO=
| Crystal structure of a Pseudomonas aeruginosa FadL homologue
|
| Hearn, E.M., Patel, D.R., Lepore, B.W., Indic, M., van den Berg, B |
| Membrane transport of hydrophobic compounds by lateral diffusion |
| To be Published |
| PDB Code: 3DWO |
| PDB Deposition Date: 2008-07-22 |
[edit]
+3DWH+
| Structural and Functional Analysis of SRA domain
|
| Qian, C., Jakoncic, J., Zhou, M. |
| Structure and hemimethylated CpG binding of the SRA domain from human UHRF1 |
| TO BE PUBLISHED |
| PDB Code: 3DWH |
| PDB Deposition Date: 2008-07-22 |
[edit]
+3DU6+
| Structure of the catalytic subunit of telomerase, TERT
|
| Skordalakes, E. |
| Structure of the Tribolium castaneum telomerase catalytic subunit TERT. |
| Nature 455: 633-637, 2008 |
| PDB Code: 3DU6 |
| PDB Deposition Date: 2008-07-16 |
[edit]
+3DU5+
| Structure of the catalytic subunit of telomerase, TERT
|
| Skordalakes, E. |
| Structure of the Tribolium castaneum telomerase catalytic subunit TERT. |
| Nature 455: 633-637, 2008 |
| PDB Code: 3DU5 |
| PDB Deposition Date: 2008-07-16 |
[edit]
+3DM7+
| Crystal Structure of the Vps75 Histone Chaperone
|
| Tang, Y., Marmorstein, R. |
| Structure of Vps75 and implications for histone chaperone function. |
| Proc.Natl.Acad.Sci.Usa 105: 12206-12211, 2008 |
| PDB Code: 3DM7 |
| PDB Deposition Date: 2008-06-30 |
[edit]
=3DJ8=
| Synthesis of (S)-2-amino-7,8-epoxyoctanoic acid and structure of its metal-bridging complex with human arginase I
|
| Di Costanzo, L., Christianson, D.W. |
| Synthesis of (2S)-2-amino-7,8-epoxyoctanoic acid and structure of its metal-bridging complex with human arginase I |
| Org.Biomol.Chem. 6: 3240-3243, 2008 |
| PDB Code: 3DJ8 |
| PDB Deposition Date: 2008-06-22 |
[edit]
+3DCB+
| Crystal structure of the Drosophila kinesin family member NOD in complex with AMPPNP
|
| Cochran, J.C., Mulko, N.K., Kull, F.J. |
| ATPase cycle of the nonmotile kinesin NOD allows microtubule end tracking and drives chromosome movement. Cell(Cambridge,Mass.) 136: 110-122 |
| Cell(Cambridge,Mass.) 136: 110-122, 2009 |
| PDB Code: 3DCB |
| PDB Deposition Date: 2008-06-03 |
[edit]
+3DC4+
| Crystal structure of the Drosophila kinesin family member NOD in complex with ADP
|
| Cochran, J.C., Mulko, N.K., Kull, F.J. |
| ATPase cycle of the nonmotile kinesin NOD allows microtubule end tracking and drives chromosome movement. Cell(Cambridge,Mass.) 136: 110-122 |
| Cell(Cambridge,Mass.) 136: 110-122, 2009 |
| PDB Code: 3DC4 |
| PDB Deposition Date: 2008-06-03 |
[edit]
+3D62+
| Development of Broad-Spectrum Halomethyl Ketone Inhibitors Against Coronavirus Main Protease 3CLpro
|
| Bacha, U., Barrila, J., Gabelli, S.B., Kiso, Y., Amzel, L.M., Freire, E. |
| Development of Broad-Spectrum Halomethyl Ketone Inhibitors Against Coronavirus Main Protease 3CLpro |
| CHEM.BIOL.DRUG.DES. 72:34-49, 2008 |
| PDB Code: 3D62 |
| PDB Deposition Date: 2008-05-18 |
[edit]
+3D44+
| Crystal structure of HePTP in complex with a dually phosphorylated Erk2 peptide mimetic
|
| Critton, D.A., Tortajada, A., Stetson, G., Page, R. |
| Structural basis of substrate recognition by hematopoietic tyrosine phosphatase. |
| Biochemistry 47: 13336-13345, 2009 |
| PDB Code: 3D44 |
| PDB Deposition Date: 2008-05-13 |
[edit]
+3D42+
| Crystal structure of HePTP in complex with a monophosphorylated Erk2 peptide
|
| Critton, D.A., Tortajada, A., Stetson, G., Page, R. |
| Structural basis of substrate recognition by hematopoietic tyrosine phosphatase. |
| Biochemistry 47: 13336-13345, 2008 |
| PDB Code: 3D42 |
| PDB Deposition Date: 2008-05-13 |
[edit]
=3D36=
| How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the Inhibitor Sda
|
| Bick, M.J., Lamour, V., Rajashankar, K.R., Gordiyenko, Y., Robinson, C.V., Darst, S.A. |
| How to Switch Off a Histidine Kinase: Crystal Structure of Geobacillus stearothermophilus KinB with the inhibitor Sda. |
| J.Mol.Biol. |
| PDB Code: 3D36 |
| PDB Deposition Date: 2008-05-09 |
[edit]
+3D35+
| Crystal Structure of RTT109-AC-COA Complex
|
| Tang, Y., Marmorstein, R. |
| Fungal Rtt109 histone acetyltransferase is an unexpected structural homolog of metazoan p300/CBP. |
| Nat.Struct.Mol.Biol. 15: 738-745, 2008 |
| PDB Code: 3D35 |
| PDB Deposition Date: 2008-05-09 |
[edit]
+3CST+
| Crystal structure of PI3K p110gamma catalytical domain in complex with organoruthenium inhibitor E5E2
|
| Xie, P., Marmorstein, R. |
| Structure-based design of an organoruthenium phosphatidyl-inositol-3-kinase inhibitor reveals a switch governing lipid kinase potency and selectivity. |
| Acs Chem.Biol. 3: 305-316, 2008 |
| PDB Code: 3CST |
| PDB Deposition Date: 2008-04-10 |
[edit]
=3CSF=
| Crystal structure of PI3K p110gamma catalytical domain in complex with organoruthenium inhibitor DW2
|
| Xie, P., Marmorstein, R. |
| Structure-based design of an organoruthenium phosphatidyl-inositol-3-kinase inhibitor reveals a switch governing lipid kinase potency and selectivity. |
| Acs Chem.Biol. 3: 305-316, 2008 |
| PDB Code: 3CSF |
| PDB Deposition Date: 2008-04-09 |
[edit]
+3COA+
| Crystal Structure of FoxO1 DBD Bound to IRE DNA
|
| Brent, M.M., Anand, R., Marmorstein, R. |
| Structural Basis for DNA Recognition by FoxO1 and Its Regulation by Posttranslational Modification. |
| Structure 16: 1407-1416, 2008 |
| PDB Code: 3COA |
| PDB Deposition Date: 2008-03-27 |
[edit]
=3CO7=
| Crystal Structure of FoxO1 DBD Bound to DBE2 DNA
|
| Brent, M.M., Anand, R., Marmorstein, R. |
| Structural Basis for DNA Recognition by FoxO1 and Its Regulation by Posttranslational Modification. |
| Structure 16: 1407-1416, 2008 |
| PDB Code: 3CO7 |
| PDB Deposition Date: 2008-03-27 |
[edit]
+3CO6+
| Crystal Structure of FoxO1 DBD Bound to DBE1 DNA
|
| Brent, M.M., Anand, R., Marmorstein, R. |
| Structural Basis for DNA Recognition by FoxO1 and Its Regulation by Posttranslational Modification. |
| Structure 16: 1407-1416, 2008 |
| PDB Code: 3CO6 |
| PDB Deposition Date: 2008-03-27 |
[edit]
+3CMG+
| Crystal structure of putative beta-galactosidase from Bacteroides fragilis
|
| Ramagopal, U.A., Rutter, M., Toro, R., Hu, S., Maletic, M., Gheyi, T., Sauder, J.M., Burley, S.K., Almo, S.C., New York Structural GenomiX Research Consortium (NYSGXRC) |
| Crystal structure of putative beta-galactosidase from Bacteroides fragilis. |
| TO BE PUBLISHED |
| PDB Code: 3CMG |
| PDB Deposition Date: 2008-03-21 |
[edit]
+3CMF+
| Crystal structure of human liver 5beta-reductase (AKR1D1) in complex with NADP and CORTISONE. Resolution 1.90 A.
|
| Di Costanzo, L., Drury, J., Penning, T.M., Christianson, D.W. |
| Crystal Structure of Human Liver {Delta}4-3-Ketosteroid 5{beta}-Reductase (AKR1D1) and Implications for Substrate Binding and Catalysis. |
| J.Biol.Chem. 283:16830-16839, 2008 |
| PDB Code: 3CMF |
| PDB Deposition Date: 2008-03-21 |
[edit]
=3CAK=
| X-ray structure of WT PTE with ethyl phosphate
|
| Kim, J., Tsai, P.-C., Almo, S.C., Raushel, F.M. |
| Structure of diethyl phosphate bound to the binuclear metal center of phosphotriesterase. |
| Biochemistry 47: 9497-9504 |
| PDB Code: 3CAK |
| PDB Deposition Date: 2008-02-20 |
[edit]
=3C9J=
| The Crystal structure of Transmembrane domain of M2 protein and Amantadine complex
|
| Stouffer, A.L., Acharya, R., Salom, D. |
| Structural basis for the function and inhibition of an influenza virus proton channel |
| Nature 451: 596-600, 2008 |
| PDB Code: 3C9J |
| PDB Deposition Date: 2008-02-15 |
