PDB (2011)

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Contents

+4A5G+

4A5G UNKNOWN
Raphanus sativus anionic peroxidase.
Jimenez-Arroyo, N., Valderrama, B., Gil-Rodriguez, P., Rojas-Trejo, S.P., Rudino-Pinera, E.
Crystallographic Structure of the Raphanus Sativus Anionic Peroxidase
To be Published ,

PDB Code: 4A5G
PDB Deposition Date: 2011-10-25

=4A2H=

4A2H -174
CRYSTAL STRUCTURE OF LACCASE FROM CORIOLOPSIS GALLICA PH 7.0
De La Mora, E., Valderrama, B., Horjales, E., Rudino-Pinera, E.
Structural Changes Caused by Radiation-Induced Reduction and Radiolysis: The Effect of X-Ray Absorbed Dose in a Fungal Multicopper Oxidase
Acta Crystallogr.,Sect.D 68:564-, 2012

PDB Code: 4A2H
PDB Deposition Date: 2011-09-27

+4A2G+

4A2G UNKNOWN
Coriolopsis gallica laccase collected at 8.98 keV
De La Mora, E., Rudino-Pinera, E.
Structural Changes Caused by Radiation-Induced Reduction and Radiolysis: The Effect of X-Ray Absorbed Dose in a Fungal Multicopper Oxidase
Acta Crystallogr.,Sect.D 68:564, 2012

PDB Code: 4A2G
PDB Deposition Date: 2011-09-26

+4A2F+

4A2F UNKNOWN
Coriolopsis gallica laccase collected at 12.65 keV
De La Mora, E., Rudino-Pinera, E.
Structural Changes Caused by Radiation-Induced Reduction and Radiolysis: The Effect of X-Ray Absorbed Dose in a Fungal Multicopper Oxidase
Acta Crystallogr.,Sect.D 68:564, 2012

PDB Code: 4A2F
PDB Deposition Date: 2011-09-26

=4A2E=

4A2E -174
CRYSTAL STRUCTURE OF A CORIOLOPSIS GALLICA LACCASE AT 1.7 A RESOLUTION PH 5.5
De La Mora, E., Valderrama, B., Horjales, E., Rudino-Pinera, E.
Structural Changes Caused by Radiation-Induced Reduction and Radiolysis: The Effect of X-Ray Absorbed Dose in a Fungal Multicopper Oxidase
Acta Crystallogr.,Sect.D 68:564-, 2012

PDB Code: 4A2E
PDB Deposition Date: 2011-09-26

=4A2D=

4A2D -174
CORIOLOPSIS GALLICA LACCASE T2 COPPER DEPLETED AT PH 4.5
De La Mora, E., Valderrama, B., Horjales, E., Rudino-Pinera, E.
Structural Changes Caused by Radiation-Induced Reduction and Radiolysis: The Effect of X-Ray Absorbed Dose in a Fungal Multicopper Oxidase
Acta Crystallogr.,Sect.D 68:564-, 2012

PDB Code: 4A2D
PDB Deposition Date: 2011-09-26

+4A0M+

4A0M -174
CRYSTAL STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE FROM SPINACH IN COMPLEX WITH NAD
Gonzalez-Segura, L., Rudino-Pinera, E., Diaz-Sanchez, A.G., Munoz-Clares, R.A.
Amino Acid Residues Critical for the Specificity for Betaine Aldehyde of the Plant Aldh10 Isoenzyme Involved in the Synthesis of Glycine Betaine.
Plant Physiol. 158:1570, 2012

PDB Code: 4A0M
PDB Deposition Date: 2011-09-09

=3ZZX=

3ZZX -174
Crystallographic structure of thioredoxin from Litopenaeus vannamei
Campos-Acevedo, A.A., Sotelo-Mundo, R.R., Rudino-Pinera, E.
Crystallographic Structure of Thioredoxin from Litopenaeus Vannamei
To be Published  :-,

PDB Code: 3ZZX
PDB Deposition Date: 2011-09-05

+3ZQA+

3ZQA -66
CRYSTALLOGRAPHIC STRUCTURE OF BETAINE ALDEHYDE DEHYDROGENASE MUTANT C286A FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH NADPH
Diaz-Sanchez, A.G., Gonzalez-Segura, L., Rudino-Pinera, E., Lira-Rocha, A., Torres-Larios, A., Munoz-Clares, R.A.,
Novel Nadph-Cysteine Covalent Adduct Found in the Active Site of an Aldehyde Dehydrogenase.
Biochem.J. 439: 443, 2011

PDB Code: 3ZQA
PDB Deposition Date: 2011-06-08

+3UPR+

3UPR UNKNOWN
HLA-B*57:01 complexed to pep-V and Abacavir
Pompeu, Y.A., Ostrov, D.A.
Drug hypersensitivity caused by alteration of the MHC-presented self-peptide repertoire.
Proc.Natl.Acad.Sci.USA 109:9959-9964, 2012

PDB Code: 3UPR
PDB Deposition Date: 2011-11-18

=3UNP=

3UNP -116
Structure of human SUN2 SUN domain
Zhou, Z.C., Greene, M.I.
Structure of the SUN domain defines features of a molecular bridge in the nuclear envelope
J.Biol.Chem. 287(8):5317-26, 2012


PDB Code: 3UNP
PDB Deposition Date: 2011-11-16

+3ULT+

3ULT -247
Crystal structure of an ice-binding protein from the perennial ryegrass, Lolium perenne
Middleton, A.J., Faucher, F., Campbell, R.L., Davies, P.L.
Antifreeze protein from freeze-tolerant grass has a beta-roll fold with an irregularly structured ice-binding site.
J.Mol.Biol. 416:713-724, 2012

PDB Code: 3ULT
PDB Deposition Date: 2011-11-11

+3ULR+

3ULR UNKNOWN
Lysozyme contamination facilitates crystallization of a hetero-trimericCortactin:Arg:Lysozyme complex
Liu, W., MacGrath, S., Koleske, A.J., Boggon, T.J.
Lysozyme contamination facilitates crystallization of a heterotrimeric cortactin-Arg-lysozyme complex.
Acta Crystallogr.,Sect.F 68:154-158, 2012

PDB Code: 3ULR
PDB Deposition Date: 2011-11-11

+3UGL+

3UGL -74
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
Biophys.J. 103:2331-2340, 2012

PDB Code: 3UGL
PDB Deposition Date: 2011-11-02

+3UGI+

3UGI -74
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
Biophys.J. 103:2331-2340, 2012

PDB Code: 3UGI
PDB Deposition Date: 2011-11-02

+3UGD+

3UGD UNKNOWN
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase C delta
To be Published ,

PDB Code: 3UGD
PDB Deposition Date: 2011-11-02

+3UFF+

3UFF UNKNOWN
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase Cdelta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase Cdelta
To be Published ,

PDB Code: 3UFF
PDB Deposition Date: 2011-11-01

+3UEY+

3UEY -74
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase Cdelta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
Biophys.J. 103:2331-2340, 2012

PDB Code: 3UEY
PDB Deposition Date: 2011-10-31

=3UEJ=

3UEJ -74
Structural and functional characterization of an anesthetic binding site in the second cysteine-rich domain of protein kinase Cdelta
Shanmugasundararaj, S., Stehle, T., Miller, K.W.
Structural and Functional Characterization of an Anesthetic Binding Site in the Second Cysteine-Rich Domain of Protein Kinase Cdelta
Biophys.J. 103:2331-2340, 2012

PDB Code: 3UEJ
PDB Deposition Date: 2011-10-30

=3UBI=

3UBI -85
The Absence of Tertiary Interactions in a Self-Assembled DNA Crystal Structure
Nguyen, N., Birktoft, J.J., Sha, R., Wang, T., Zheng, J., Constantinou, P.E., Ginell, S.L., Chen, Y., Mao, C., Seeman, N.C.
The absence of tertiary interactions in a self-assembled DNA crystal structure.
J.Mol.Recognit. 25: 234-237, 2012

PDB Code: 3UBI
PDB Deposition Date: 2011-10-24

+3U90+

3U90 UNKNOWN
apoferritin: complex with SDS
Liu, R., Bu, W., Xi, J., Mortazavi, S.R., Cheung-Lau, J.C., Dmochowski, I.J., Loll, P.J.
Beyond the detergent effect: a binding site for sodium dodecyl sulfate (SDS) in mammalian apoferritin
Acta Crystallogr.,Sect.D 68:497-504, 2012

PDB Code: 3U90
PDB Deposition Date: 2011-10-17

+3TXZ+

3TXZ UNKNOWN
OYE1-W116Q complexed with R-carvone
Sullivan, B., Pompeu, Y.A., Stewart, J.D.
Probing the enantioselectivity for beta substituted enones in OYE
To be Published ,

PDB Code: 3TXZ
PDB Deposition Date: 2011-09-23

=3TV8=

3TV8 -200
Pharmacological Chaperoning in Human alpha-Galactosidase
Rogich, J.J., Guce, A.I., Clark, N.E., Garman, S.C.
The Molecular Basis of Pharmacological Chaperoning in Human α-Galactosidase.
Chem Biol. 18(12):1521-6, 2011

PDB Code: 3TV8
PDB Deposition Date: 2011-09-19

=3TQ1=

3TQ1 -238
Human DNA Polymerase eta in binary complex with DNA
Ummat, A., Silverstein, T.D., Jain, R., Buku, A., Johnson, R.E., Prakash, L., Prakash, S., Aggarwal, A.K.
Human DNA Polymerase Eta Is Pre-Aligned for dNTP Binding and Catalysis.
J.Mol.Biol. 415:627-634, 2012

PDB Code: 3TQ1
PDB Deposition Date: 2011-09-08

+3TOB+

3TOB --311
Human MOF E350Q crystal structure with active site lysine partially acetylated
Yuan, H., Ding, E.C., Marmorstein, R.
MYST protein acetyltransferase activity requires active site lysine autoacetylation
EMBO J. 31(1):58-70, 2011

PDB Code: 3TOB
PDB Deposition Date: 2011-09-04

=3TOA=

3TOA -311
Human MOF crystal structure with active site lysine partially acetylated
Yuan, H., Ding, E.C., Marmorstein, R.
MYST protein acetyltransferase activity requires active site lysine autoacetylation.
Embo J. 31:58-70, 2011

PDB Code: 3TOA
PDB Deposition Date: 2011-09-04

=3TO9=

3TO9 -311
Crystal structure of yeast Esa1 E338Q HAT domain bound to coenzyme A with active site lysine acetylated
Yuan, H., Ding, E.C., Marmorstein, R.
MYST protein acetyltransferase activity requires active site lysine autoacetylation.
Embo J. 31:58-70, 2011

PDB Code: 3TO9
PDB Deposition Date: 2011-09-04

+3TO7+

3TO7 -311
Crystal structure of yeast Esa1 HAT domain bound to coenzyme A with active site lysine acetylated
Yuan, H., Ding, E.C., Marmorstein, R.
MYST protein acetyltransferase activity requires active site lysine autoacetylation
Embo J. 31: 58-70, 2011

PDB Code: 3TO7
PDB Deposition Date: 2011-09-04

=3TO6=

3TO6 -311
Crystal structure of yeast Esa1 HAT domain complexed with H4K16CoA bisubstrate inhibitor
Yuan, H., Ding, E.C., Marmorstein, R.
MYST protein acetyltransferase activity requires active site lysine autoacetylation.
Embo J. 31:58-70, 2011

PDB Code: 3TO6
PDB Deposition Date: 2011-09-04

=3TM2=

3TM2 -344
Crystal structure of mature ThnT with a covalently bound product mimic
Schildbach, J.F., Wright, N.T., Buller, A.R.
Autoproteolytic Activation of ThnT Results in Structural Reorganization Necessary for Substrate Binding and Catalysis.
J.Mol.Biol. 422:508-518, 2012

PDB Code: 3TM2
PDB Deposition Date: 2011-08-30

+3TM1+

3TM1 -344
Crystal structure of mature ThnT, a pantetheine hydrolase
Schildbach, J.F., Wright, N.T., Buller, A.R.
Autoproteolytic Activation of ThnT Results in Structural Reorganization Necessary for Substrate Binding and Catalysis.
J.Mol.Biol. 422:508-518, 2012

PDB Code: 3TM1
PDB Deposition Date: 2011-08-30

=3TJ3=

3TJ3 -65
Structure of importin a5 bound to the N-terminus of Nup50
Pumroy, R., Nardozzi, J.D., Hart, D.J., Root, M.J., Cingolani, G.
NUP50 stabilizes the closed conformation of ARM 10 in importin alpha 5 to facilitate cargo disassembly
To be Published  :-,

PDB Code: 3TJ3
PDB Deposition Date: 2011-08-23

=3TH4=

3TH4 -335
Mg2+ Is Required for Optimal Folding of the Gamma-Carboxyglutamic Acid (Gla) Domains of Vitamin K-Dependent Clotting Factors At Physiological Ca2+
Vadivel, K., Agah, S., Cascio, D., Padmanabhan, K., Bajaj, S.P.
Mg2+ Is Required for Optimal Folding of the Gamma-Carboxyglutamic Acid (Gla) Domains of Vitamin K-Dependent Clotting Factors At Physiological Ca2+
To be Published  :-,

PDB Code: 3TH4
PDB Deposition Date: 2011-08-18

+3TFY+

3TFY -UNKNOWN
Naa50p amino-terminal acetyltransferase bound to substrate peptide fragment and CoA
Liszczak, G.P., Marmorstein, R.,
Structure of a Ternary Naa50p (NAT5/SAN) N-terminal Acetyltransferase Complex Reveals the Molecular Basis for Substrate-specific Acetylation.
J.Biol.Chem. 286: 37002-37010, 2011


PDB Code: 3TFY
PDB Deposition Date: 2011-08-16

=3T50=

3T50 -345
X-ray structure of the LOV domain from the LOV-HK sensory protein from Brucella abortus (dark state).
Rinaldi, J.J., Klinke, S., Goldbaum, F.A.
The Beta-Scaffold of the LOV Domain of the Brucella Light-Activated Histidine Kinase Is a Key Element for Signal Transduction
J.Mol.Biol. 420:112-127, 2012

PDB Code: 3T50
PDB Deposition Date: 2011-07-26

+3T24+

3T24 -110b
Crystal structure of Pseudomonas aeruginosa OpdQ
van den Berg, B., Eren, E.
Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol. 10:e1001242-e1001242, 2012

PDB Code: 3T24
PDB Deposition Date: 2011-07-22

+3T20+

3T20 -110b
Crystal structure of Pseudomonas aeruginosa OccK5 (OpdH)
van den Berg, B., Eren, E.
Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol. 10:e1001242-e1001242, 2012

PDB Code: 3T20
PDB Deposition Date: 2011-07-22

=3T1B=

3T1B -70
Crystal structure of the full-length AphB N100E variant
Taylor, J.L., De Silva, R.S., Kovacikova, G., Lin, W., Taylor, R.K., Skorupski, K., Kull, F.J.
The crystal structure of AphB, a virulence gene activator from Vibrio cholerae, reveals residues that influence its response to oxygen and pH.
Mol.Microbiol. 83:457-470, 2012

PDB Code: 3T1B
PDB Deposition Date: 2011-07-21

+3T0S+

3T0S -110b
Crystal structure of Pseudomonas aeruginosa OccK4 (OpdL)
van den Berg, B., Eren, E.
Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol. 10:e1001242-e1001242, 2012

PDB Code: 3T0S
PDB Deposition Date: 2011-07-20

=3T0Q=

3T0Q -269
Motor Domain Structure of the Kar3-like kinesin from Ashbya gossypii
Duan, D., Hnatchuk, D.J., Brenner, J., Davis, D., Allingham, J.S.
Crystal structure of the Kar3-like kinesin motor domain from the filamentous fungus Ashbya gossypii
Proteins 80:1016-1027, 2012

PDB Code: 3T0Q
PDB Deposition Date: 2011-07-20

+3SZV+

3SZV -110b
Crystal structure of Pseudomonas aeruginosa OccK3 (OpdO)
Bert van den, B., Elif, E.
Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol. 10:e1001242-e1001242, 2012

PDB Code: 3SZV
PDB Deposition Date: 2011-07-19

=3SZP=

3SZP -70
Full-length structure of the Vibrio cholerae virulence activator, AphB, a member of the LTTR protein family
Taylor, J.L., De Silva, R.S., Kovacikova, G., Lin, W., Taylor, R.K., Skorupski, K., Kull, F.J.
The crystal structure of AphB, a virulence gene activator from Vibrio cholerae, reveals residues that influence its response to oxygen and pH.
Mol.Microbiol. 83: 457-470, 2012
PDB Code: 3SZP
PDB Deposition Date: 2011-07-19

+3SZD+

3SZD -110b
Crystal structure of Pseudomonas aeruginosa OccK2 (OpdF)
van den Berg, B., Eren, E.
Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol. 10:e1001242-e1001242, 2012

PDB Code: 3SZD
PDB Deposition Date: 2011-07-18

+3SYS+

3SYS -110b
Improved crystal structure of Pseudomonas aeruginosa OccK1 (OpdK)
van den Berg, B., Eren, E.
Substrate specificity within a family of outer membrane carboxylate channels.
<Plos Biol. 10: e1001242-e1001242, 2012
PDB Code: 3SYS
PDB Deposition Date: 2011-07-18

+3SYB+

3SYB -110b
Crystal structure of Pseudomonas aeruginosa OccD3 (OpdP)
van den Berg, B., Eren, E.
Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol. 10:e1001242-e1001242, 2012

PDB Code: 3SYB
PDB Deposition Date: 2011-07-16

+3SY9+

3SY9 -110b
Crystal structure of Pseudomonas aeruginosa OccD2 (OpdC)
van den Berg, B., Eren, E.
Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol. 10:e1001242-e1001242, 2012

PDB Code: 3SY9
PDB Deposition Date: 2011-07-16

+3SY7+

3SY7 -110b
Improved crystal structure of Pseudomonas aeruginosa OprD
van den Berg, B., Eren, E.
Substrate specificity within a family of outer membrane carboxylate channels.
Plos Biol. 10: e1001242-e1001242, 2012
PDB Code: 3SY7
PDB Deposition Date: 2011-07-15

=3SWV=

3SWV -136
Crystal Structure of a domain of Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (Brefeldin A-inhibited GEP 2) from Homo sapiens (Human), Northeast Structural Genomics Consortium target id HR5562A
Seetharaman, J., Su, M., Forouhar, F., Wang, D., Janjua, H., Cunningham, K., Owens, L., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium
Crystal Structure of a domain of Brefeldin A-inhibited guanine nucleotide-exchange protein 2 (BrefeldinA-inhibited GEP 2) from Homo sapiens (Human), Northeast Structural Genomics Consortium target id HR5562A
TO BE PUBLISHED , 2011
PDB Code: 3SWV
PDB Deposition Date: 2011-07-14

=3SL1=

3SL1 -188
Crystal Structure of P. falciparum arginase complexed with 2-amino-6-borono-2-methylhexanoic acid
Dowling, D.P., Ilies, M., Christianson, D.W.
Binding of alpha,alpha-Disubstituted Amino Acids to Arginase Suggests New Avenues for Inhibitor Design
J.Med.Chem.  :-, 2011

PDB Code: 3SL1
PDB Deposition Date: 2011-06-23