Publications-2005

--- Year 2005 ---

• M. Allaire, A. Berntson, A. Jain, J. Jakoncic, C.C. Kao, D. P. Siddons, I. So, V. Venkatagiriyappa, Z. Yin and V. Stojanoff, 2005.

A Modular approach to the beam line automation: The NIGMS Facility at the NSLS Synchrotron Radiation News 18 (2005) 23-27

• Kajander, T., Cortajarena, A.L., Main, E.W.R., Mochrie, S.G.J. and Regan, L. (2005) (27b)
  

A New Folding Paradigm for Repeat Proteins.
J. Am. Chem. Soc. 127: 10188-90

• Y. Zhang, H. Moriyama, K. Homma and J. Van Etten (2005 Aug) (61d)
  

Chlorella virus encoded deoxyuridine triphosphatases exhibit different temperature optima.
J. Viol. 79(15):9945-9953.

• Mirza, I.A., Nazi, I., Korczynska, M., Wright, G.D., Berghuis, A.M. (2005) (126)
  

Crystal Structure of Homoserine Transacetylase from Haemophilus influenzae Reveals a New Family of alpha/beta-Hydrolases.
Biochemistry. 44: 15768-15773

• De Silva, R. S., Kovacikova, G., Lin, W., Taylor, R. K., Skorupski, K., and Kull, F. J. (2005) (118,34a)
  

Crystal Structure of the Virulence Gene Activator Apha from Vibrio Cholerae Reveals It is a Novel Member of the Winged Helix Transcription Factor Superfamily.
J.Biol.Chem. 280:13779-13783

• E Pozharski, A Moulin, A Hewagama, A Shanafelt, G Petsko, D Ringe.(2005) (16b)
  

Diversity of Hapten Recognition: Structural Study of an Anti-Cocaine Antibody M82G2.
J. Mol. Biol.. 349(3): 570-582

• Suits, M.D., Pal, G.P., Nakatsu, A., Matte, A., Cygler, M. Jia, Z. (2005) (61c)
  

Identification of an Escherichia coli O 157:H7 heme oxygenase with tandem functional repeats.
PNAS, 102: 16955-16960.

• Bzymek, K.P., Moulin, A., Swierczek, S.I., Ringe, D., Petsko, G.A., Holz, R.C. (2005) (16a)
  

Kinetic, Spectroscopic, and X-ray Crystallographic Characterization of the Functional E151H Aminopeptidase from Aeromonas proteolytica.
Biochemistry. V44, pp.12030-12040

• Xia Z, Azurmendi HF, Lairson LL, Withers SG, Gabelli SB, Bianchet MA, Amzel LM, Mildvan AS. (2005) (3)
  

Mutational, Structural, and Kinetic Evidence for a Dissociative Mechanism in the GDP-mannose Mannosyl Hydrolase Reaction.
Biochemistry. 44(25):8989-97

• Nair, D. T., Johnson, R. E., Prakash, L., Prakash, S.,and Aggarwal, A. K. (2005) (62b)
  

Rev1 Employs a Novel Mechanism of DNA Synthesis Using a Protein Template.
Science. 309:2219 -2222

• MA. Adams and Z. Jia (2005 Mar) (25)
  

Structural and biochemical evidence for a quinone redox cycle in Escherichia coli: Identification of a novel quinol monooxygenase.
J.Biol.Chem. 280(9):8359-63.

• Kuzuyama, T., Noel, J.P. and Richard, S.B. (2005 Jun) (12c)
  

Structural basis for the promiscuous biosynthetic prenylation of aromatic natural products.
Nature. 435(7044):983-7.

• M. Nadella, M.A. Bianchet, S.B.Gabelli, J. Barrila,and L.M. Amzel (2005 Nov) (170b,96)
  

Structure and activity of the axon guidance protein MICAL.
Proc Natl Acad Sci USA, 102(46):16830-16835.

• K Pant, B Crane (2005) (28b)
  

Structure of a Loose Dimer: an Intermediate in Nitric Oxide Synthase Assembly.
J. Mol. Biol.. 352: 932-940

• Mildvan AS, Xia Z, Azurmendi HF, Saraswat V, Legler PM, Massiah MA, Gabelli SB, Bianchet MA, Kang LW, Amzel LM. (2005) (3)
  

Structures and mechanisms of Nudix hydrolases.
Arch Biochem Biophys. 433(1):129-43

• A Vahedi-Faridi, V Stojanoff, J Yeh. (2005) (34d)
  

The Effects of Flash-Annealing on Glycerol Kinase Crystals.
Acta Cryst. D. 61: 982-989

• M. Hahn, MJ. Nicholson, J. Pyrdol,and KW. Wucherpfennig (2005 May) (61a)
  

Unconventional topology of self peptide-major histocompatibility complex binding by a human autoimmune T cell receptor.
Nat Immunol. 6(5):490-496.

• MJ. Nicholson, M. Hahn,and KW. Wucherpfennig (2005 Oct) (61a)
  

Unusual features of self-peptide/MHC binding by autoimmune T cell receptors.
Immunity. 23(4): 351-360.

• M.A. Adams and Z. Jia. (2005) (26)

Structural and biochemical evidence for an enzymatic quinone redox cycle in Escherichia coli: Identification of a novel quinol monooxygenase.
J. Biol. Chem. 280, 8358-8363.

• Fokine, A., Leiman, P.G., Shneider, M.M., Ahvazi, B., Boeshans, K.M., Steven, A.C., Black, L.W., Mesyanzhinov, V.V., Rossmann, M.G. (2005) (33)

Structural and functional similarities between the capsid proteins of bacteriophages T4 and HK97 point to a common ancestry.
Proc.Natl.Acad.Sci.Usa 102: 7163-7168

--- PHD Thesis ---

• Sebastien Boutet, 2005.

Coherent X-Ray Diffractive Imaging and Nucleation of Protein Crystals.
PhD thesis (2005)

• Asa Holmner, 2005.

Molecular recognition of carbohydrates - Structural and functional characterisation of bacterial toxins and fungal lectins.
PhD thesis (2005)

• M Mantovani, 2005.

Caracterizacao molecular de enzimas envolvidas na via de reciclagem de purino-nucleotideos de Leishmania major. 2005. 0 f.
Tese (Doutorado em Fisica Biomolecular) - Instituto de Fisica de Sao Carlos, Fundacao de Amparo a Pesquisa do Estado de Sao Paulo.
Orientador: Otavio Henrique Thiemann.
PhD thesis (2005)