Publications-2006

From X6AWiki

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--- Year 2006 ---

  • Masuda, K., Richter, M., Song, X., Berezov, A., Masuda, K., Murali, R., Greene, M. I. & Zhang, H.(2006) x6a117

AHNP-streptavidin: a tetrameric bacterially produced antibody surrogate fusion protein against p185her2/neu.
Oncogene25: 7740-7746.


  • Yang, Yue, Yuan, J.S., Ross, J., Noel, J.P., and Pichersky, E.(2006) x6a12d

An Arabidopsis thaliana methyltransferase capable of methylating farnesoic acid.
Arch Biochem Biophys.448(1-2):123-32..


  • Hernandez Prada JA, Haire RN, Allaire M, Jakoncic J, Stojanoff V, Cannon JP, Litman GW, Ostrov DA.(2006) x6a23

Ancient evolutionary origin of diversified variable regions demonstrated by crystal structures of an immune-type receptor in amphioxus.
Nat Immunol.7(8):875-82..


  • Jakoncic, J., Di Michiel, M., Zhong, Z., Honkimaki, V., Jouanneau, Y. & Stojanoff, V.(2006) x6a49

Anomalous Diffraction at Ultra-High Energy for Protein Crystallography.
J. Appl. Cryst.39: 831-841..


  • Olia AS, Al-Bassam J, Winn-Stapley DA, Joss L, Casjens SR, Cingolani G.(2006) x6a155

Binding-induced stabilization and assembly of the phage P22 tail accessory factor gp4.
J Mol Biol.363(2):558-76..


  • M Yang*, K Horii*, AB Herr, and TL Kirley.(2006) x6a77

Calcium-dependent dimerization of human soluble calcium activated nucleotidase: Characterization of the dimer interface.
J. Biol. Chem.281:28307-28317.


  • Maximo Barreras, Mario A. Bianchet and Luis Ielpi.(2006) x6a170c

Crystallization and preliminary crystallographic cgaracterization of GumK, a membrane -associated glucorosyltransferase from Xanthomas Campestrid required for xanthan polysaccharide synthesis.
Acta Cryst. F.62: 880-883.


  • Cingolani G, Andrews D, Casjens S.(2006) x6a155

Crystallogenesis of bacteriophage P22 tail accessory factor gp26 at acidic and neutral pH.
Acta Crystallograph Sect F Struct Biol Cryst Commun.62(Pt 5):477-82..


  • Shao, C.,Zhang, F.,Kemp, M.M.,Linhardt, R.J.,Waisman, D.M.,Head, J.F.,Seaton, B.A.(2006) x6a61b

Crystallographic analysis of calcium-dependent heparin binding to annexin A2.
J.Biol.Chem.281: pp.31689-31695.


  • Wang, Y., Zhang, Y.J. & Ha, Y.(2006) x6a129

Crystal structure of a rhomboid family intramembrane protease
Nature444: 179-183..


  • Park, H.H.,Wu, H.(2006) x6a111

Crystal Structure of RAIDD Death Domain Implicates Potential Mechanism of PIDDosome Assembly
J Mol Biol.v357: pp.358-364.


  • Wilson, J.J.,Kovall, R.A.(2006) x6a57

Crystal structure of the CSL-Notch-Mastermind ternary complex bound to DNA.
Cell124: 985-996.


  • Subbarao GV, van den Berg B.(2006) x6a47c

Crystal structure of the monomeric porin OmpG.
J Mol Biol.360(4):750-9..


  • R Williams, T Holyoak, G McDonald, C Gui, A Fenton.(2006) x6a89

Differentiating a Ligand's Chemical Requirements for Allosteric Interactions from Those for Protein Binding. Phenylalanine Inhibition of Pyruvate Kinase.
Biochemistry.45: 5421-5429.


  • Xi, J., Liu, R., Rossi, M. J., Yang, J., Loll, P. J., Dailey, W. P., & Eckenhoff, R. G.(2006) x6a97

High resolution features from low affinity interactions:Photoactive analogs of the haloether anesthetics.
ACS Chem. Biol.1: 377-384..


  • Hedstrom L, Gan L.(2006) x6a42

IMP dehydrogenase: structural schizophrenia and an unusual base.
Curr Opin Chem Biol.10(5):520-5.


  • Adams JJ, Pal, G., Jia, Z. Smith, S.P.(2006) x6a24

Mechanism of bacterial cell surface attachment and cohesin-dockerin specificity revealed by the structure of cellulosomal type II cohesin-dockerin complex
PNAS103(2): 305-310.


  • Bianchet, M.A., Krosky, D.J., Ghung, S., Seiple, L., Amzel, L.M., Stivers,J.T.(2006) x6a231

Mimicking damaged DNA with a small molecule inhibitor of human UNG2
Nucleic Acids Resv34: pp.5872-5879.


  • Adams MA and Jia Z.(2006) x6a25

Modulator of Drug Activity B from Escherichia coli: Crystal structure of a prokaryotic homologue of DT-diaphorase.
J. Mol. Biol359(2): 455-65..


  • Schreiter ER, Wang SC, Zamble DB, Drennan CL(2006) x6a60

NikR-operator complex structure and the mechanism of repressor activation by metal ions.
PNAS103: 13676-81.


  • Pant, K.,Crane, B.R.(2006) x6a28b

Nitrosyl-heme structures of Bacillus subtilis nitric oxide synthase have implications for understanding substrate oxidation.
Biochemistry45: pp.2537-2544.


  • Laptenko, O., Kim, S.-S., Lee, J., Starodubtseva, M., Cava, F., Berenguer, J., Kong, X.P., Borukhov, S.(2006) x6a7

pH-dependent conformational switch activates the inhibitor of transcription elongation
Embo J.25: 2131-2141.


  • Nicholson, M.J., Moradi, B., Seth, N.P., Xing, X., Cuny, G.D., Stein, R.L., Wucherpfennig, K.W.(2006) x6a61a

Small molecules that enhance the catalytic efficiency of HLA-DM.
J.Immunol.176: 4208-4220.


  • Ferreira, F.M.,Mendoza-Hernandez, G.,Aparicio, R.,Fischer, H.,Calcagno, M.L.,Oliva, G.(2006) x6a9

Structural analysis of N-acetylglucosamine-6-phosphate deacetylase apoenzyme from Escherichia coli.
J.Mol.Biol.359: pp.308-321.


  • Adams MA, Singh VK, Keller BO and Jia Z.(2006) x6a29

Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7.
Mol. Microbiol.61(6):1469-84..


  • Liu, C.J.,Deavours, B.E.,Richard, S.B.,Ferrer, J.L.,Blount, J.W.,Huhman, D.,Dixon, R.A.,Noel, J.P.(2006) x6a12d

Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses.
Plant Cell18: 3656-3669.


  • Natasha Pashkova, Yui Jin S. Ramaswamy*, and Lois S. Weisman(2006) x6a21

Structural Basis for myosin V discrimination between distinct cargoes.
EMBO Journal25: 693-700.


  • K Horii, ML Kahn, and AB Herr(2006) x6a76

Structural basis for platelet collagen responses by the immune-type receptor glycoprotein VI.
Blood108:936-942.


  • Florence Pojer, Jean-Luc Ferrer, Stephane B. Richard, Dinesh A. Nagegowda, Mee-Lend Chye, Thomas J. Bach, and Joseph P. Noel(2006) x6a12b

Structural basis for the design of potent and species-specific inhibitors of 3-hydroxy-3-methylglutaryl CoA synthases
P NATL ACAD SCI USA103(31):11491-11496.


  • Botuyan, M.V., Lee, J., Ward, I.M., Kim, J.E., Thompson, J.R., Chen, J., Mer, G.(2006) x6a233

Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair.
Cell(Cambridge,Mass.)127: 1361-1373.


  • Hwang WC, Lin Y, Santelli E, Sui J, Jaroszewski L, Stec B, Farzan M, Marasco WA(2006) x6a91

Structural basis of neutralization by a human anti-severe acute respiratory syndrome spike protein antibody, 80R.
J Biol Chem.281(45):34610-6..


  • Holyoak, T., Sullivan, S.M., and Nowak, T.(2006) x6a89

Structural insights into the mechanism of PEPCK catalysis.
Biochemistry45: 8254-8263..


  • Sudhamsu, J.,Crane, B.R.(2006) x6a141

Structure and Reactivity of a Thermostable Prokaryotic Nitric-oxide Synthase That Forms a Long-lived Oxy-Heme Complex.
J.Biol.Chem.281: 9623-9632..


  • Tang, Y., Poustovoitov, M.V.,Zhao, K., Garfinkel, M., Canutescu, A., Dunbrack, R., Adams, P.D., and Marmorstein, R.(2006) x6a72

Structure of a human ASF1a/HIRA complex: Insights into specificity of histone chaperone complex assembly.
Nature Struc. Mol. Biol.13: 921-929..


  • Ye, Q.,Li, X.,Wong, A.,Wei, Q.,Jia, Z.(2006) x6a36

Structure of calmodulin bound to a calcineurin Peptide: a new way of making an old binding mode.
Biochemistry45: 738-745.


  • Pawelek, P.D.,Croteau, N.,Ng-Thow-Hing, C.,Khursigara, C.M.,Moiseeva, N.,Allaire, M.,Coulton, J.W.(2006) x6a46

Structure of TonB in complex with FhuA, E. coli outer membrane receptor.
Science.312(5778):1399-402..


  • A Accardi, S Lobet, C Williams, C Miller, R Dutzler.(2006) x6a232

Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger.
J. Mol. Biol.362: 691-699.


  • Alvarez-Venegas, R., Sadder, M., Hlavacka, A., Baluska, F., Xia, Y., Lu, G., Firsov, A., Sarath, G., Moriyama, H., Dubrovsky, J. G., and Avramova, Z.(2006) x6a61d

The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes.
Proc Natl Acad Sci U S A103: 6049-54..


  • J. Payandeh, M. Fujihashi, W. Gillon & E.F. Pai(2006) x6a39

The Crystal Structure of (S)-3-O-geranylgeranylglycerol-phosphate-synthase from Archaeoglobus fulgidus Reveals an Ancient Fold for an Ancient Enzyme.
J. Biol. Chem.281(9):6070-8..


  • Xu, W., Ahmed, S., Moriyama, H., and Chollet, R.(2006) x6a61d

The Importance of the Strictly Conserved, C-terminal Glycine Residue in Phosphoenolpyruvate Carboxylase for Overall Catalysis: MUTAGENESIS AND TRUNCATION OF GLY-961 IN THE SORGHUM C4 LEAF ISOFORM.
J Biol Chem.281: 17238-45..


  • Ficko-Blean E & Boraston AB(2006) x6a147

The Interaction of a Carbohydrate-binding Module from a Clostridium perfringens N-Acetyl-beta-hexosaminidase with Its Carbohydrate Receptor.
J Biol Chem.281(49):37748-57..


  • Hong H, Patel DR, Tamm LK, van den Berg B.(2006) x6a47c

The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.
J Biol Chem.281(11):7568-77..


  • Hong H, Patel DR, Tamm LK, van den Berg B.(2006) x6a47

The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.
J Biol Chem.281(11):7568-77..


  • van Bueren AL, Boraston AB.(2006) x6a144

The Structural Basis of alpha-Glucan Recognition by a Family 41 Carbohydrate-binding Module from Thermotoga maritima.
J Mol Biol.v365(3):555-560.


  • Gabelli SB, Azurmendi HF, Bianchet MA, Amzel LM, Mildvan AS.(2006) x6a3

X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction.
Biochemistry.45(38):11290-303..



--- Year 2006 (No Project) ---