Publications-2006

--- Year 2006 ---

1. Masuda, K., Richter, M., Song, X., Berezov, A., Masuda, K., Murali, R., Greene, M. I. & Zhang, H. (2006) (117)
AHNP-streptavidin: a tetrameric bacterially produced antibody surrogate fusion protein against p185her2/neu.
Oncogene 25: 7740-7746

2. Yang, Yue, Yuan, J.S., Ross, J., Noel, J.P., and Pichersky, E. (2006 Apr 15) (12d)
An Arabidopsis thaliana methyltransferase capable of methylating farnesoic acid.
Arch Biochem Biophys. 448(1-2):123-32.

3. J Prada, R Haire, M Allaire, J Jakoncic, V Stojanoff, J Cannon, G Litman, D Ostrov. (2006) (23)
Ancient Evolutionary Origin of Diversified Variable Regions Demonstrated by Crystal Structures of an Immune-Type Receptor in Amphioxus.
Nat. Immunol.. 7: 875-882

4. Jakoncic, J., Di Michiel, M., Zhong, Z., Honkimaki, V., Jouanneau, Y. & Stojanoff, V. (2006) (49)
Anomalous Diffraction at Ultra-High Energy for Protein Crystallography.
J. Appl. Cryst. 39: 831-841.

5. Olia AS, Al-Bassam J, Winn-Stapley DA, Joss L, Casjens SR, Cingolani G. (2006) (155)
Binding-induced stabilization and assembly of the phage P22 tail accessory factor gp4.
J Mol Biol., 363(2):558-76.

6. Yang, M., Horii, K., Herr, A.B., Kirley, T.L. (2006) (77)
Calcium-dependent dimerization of human soluble calcium activated nucleotidase: characterization of the dimer interface.
J.Biol.Chem., v281: pp.28307-28317

7. Maximo Barreras, Mario A. Bianchet and Luis Ielpi. (2006) (170c)
Crystallization and preliminary crystallographic cgaracterization of GumK, a membrane -associated glucorosyltransferase from Xanthomas Campestrid required for xanthan polysaccharide synthesis.
Acta Cryst.F. 62: 880-883

8. G Cingolani, D Andrews, S Casjens. (2006) (155)
Crystallogenesis of Bacteriophage P22 Tail Accessory Factor gp26 at Acidic and Neutral pH.
Acta Cryst. F. 62: 477-482

9. Shao, C., Zhang, F., Kemp, M.M., Linhardt, R.J., Waisman, D.M., Head, J.F., Seaton, B.A. (2006) (61b)
Crystallographic analysis of calcium-dependent heparin binding to annexin A2.
J.Biol.Chem. v281: pp.31689-31695

10. Wang, Y., Zhang, Y., Ha, Y. (2006 Oct) (129)
Crystal Structure of a Rhomboid Family Intramembrane Protease.
Nature. 444:179-183

11. Park, H.H., Wu, H. (2006) (111)
Crystal Structure of RAIDD Death Domain Implicates Potential Mechanism of PIDDosome Assembly
J Mol Biol. 357: pp.358-364

12. Wilson, J.J., Kovall, R.A. (2006) (57)
Crystal structure of the CSL-Notch-Mastermind ternary complex bound to DNA.
Cell. v124: pp.985-996

13. G Subbarao, B van den Berg. (2006) (47c)
Crystal Structure of the Monomeric Porin OmpG.
J. Mol. Biol.. 360: 750-759

14. R Williams, T Holyoak, G McDonald, C Gui, A Fenton. (2006) (89)
Differentiating a Ligand's Chemical Requirements for Allosteric Interactions from Those for Protein Binding. Phenylalanine Inhibition of Pyruvate Kinase.
Biochemistry. 45: 5421-5429

15. Xi, J., Liu, R., Rossi, M. J., Yang, J., Loll, P. J., Dailey, W. P., & Eckenhoff, R. G. (2006) (97)
High resolution features from low affinity interactions: Photoactive analogs of the haloether anesthetics.
ACS Chem. Biol. 1: 377-384.

16. Hedstrom L, Gan L. (2006) (42)
IMP dehydrogenase: structural schizophrenia and an unusual base.
Curr Opin Chem Biol. 10(5):520-5

17. Adams, J.J., Pal, G., Jia, Z., Smith, S.P. (2006 Jan) (24)
Mechanism of bacterial cell-surface attachment revealed by the structure of cellulosomal type II cohesin-dockerin complex.
Proc.Natl.Acad.Sci.Usa 103: 305-310

18. Bianchet, M.A., Krosky, D.J., Ghung, S., Seiple, L., Amzel, L.M., Stivers,J.T. (2006) (231)
Mimicking damaged DNA with a small molecule inhibitor of human UNG2.
Nucleic Acids Res 34: pp.5872-5879

19. Adams MA and Jia Z. (2006) (25)
Modulator of Drug Activity B from Escherichia coli: Crystal structure of a prokaryotic homologue of DT-diaphorase.
J. Mol. Biol 359(2): 455-65.

20. Schreiter ER, Wang SC, Zamble DB, Drennan CL (2006) (60)
NikR-operator complex structure and the mechanism of repressor activation by metal ions.
PNAS, 103: 13676-81.

21. K Pant, B Crane. (2006) (28b)
Nitrosyl-Heme Structures of Bacillus subtilis Nitric Oxide Synthase Have Implications for Understanding Substrate Oxidation.
Biochemistry. 45: 2537-2544

22. Laptenko, O., Kim, S.-S., Lee, J., Starodubtseva, M., Cava, F., Berenguer, J., Kong, X.P., Borukhov, S. (2006) (7)
pH-dependent conformational switch activates the inhibitor of transcription elongation.
Embo. J. 25: 2131-2141

23. Nicholson, M.J., Moradi, B., Seth, N.P., Xing, X., Cuny, G.D., Stein, R.L., Wucherpfennig, K.W. , 2006 (61a)
Small molecules that enhance the catalytic efficiency of HLA-DM.
J.Immunol. 176: 4208-4220

24. F Ferreira, G Mendoza-Hernandez, M Castaneda-Bueno, R Aparicio, H Fischer, M Calcagno, G Oliva. (2006) (9)
Structural Analysis of N-acetylglucosamine-6-phosphate Deacetylase Apoenzyme from Escherichia coli.
J. Mol. Biol.. 359: 308-321

25. Adams MA, Singh VK, Keller BO and Jia Z. (2006) (29)
Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7.
Mol. Microbiol. 61(6):1469-84.

26. Liu, C.J., Deavours, B.E., Richard, S.B., Ferrer, J.L., Blount, J.W., Huhman, D., Dixon, R.A., Noel, J.P. (2006) (12d) Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses.
Plant Cell 18: 3656-3669

27. Natasha Pashkova, Yui Jin S. Ramaswamy, Lois S. Weisman (2006 Jan) (21)
Structural Basis for myosin V discrimination between distinct cargoes.
EMBO Journal. 25:693-700

28. K Horii, ML Kahn, and AB Herr (2006) (76)
Structural basis for platelet collagen responses by the immune-type receptor glycoprotein VI.
Blood 108:936-942.

29. Florence Pojer, Jean-Luc Ferrer, Stephane B. Richard, Dinesh A. Nagegowda, Mee-Lend Chye, Thomas J. Bach, and Joseph P. Noel (2006) (12b)
Structural basis for the design of potent and species-specific inhibitors of 3-hydroxy-3-methylglutaryl CoA synthases.
P NATL ACAD SCI USA, 103(31):11491-11496

30. Botuyan, M.V., Lee, J., Ward, I.M., Kim, J.E., Thompson, J.R., Chen, J., Mer, G. (2006) (233)
Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair.
Cell(Cambridge,Mass.) 127: 1361-1373

31. Hwang WC, Lin Y, Santelli E, Sui J, Jaroszewski L, Stec B, Farzan M, Marasco WA, Liddington RC. (2006 Nov 10) (91)
Structural Basis of Neutralization by a Human Anti-severe Acute Respiratory Syndrome Spike Protein Antibody,80R.
J Biol Chem. 281(45):34610-6.

32. Holyoak, T., Sullivan, S.M., and Nowak, T. (2006) (89)
Structural insights into the mechanism of PEPCK catalysis.
Biochemistry, 45: 8254-8263.

33. Sudhamsu, J., Crane, B.R. (2006) (141)
Structure and Reactivity of a Thermostable Prokaryotic Nitric-oxide Synthase That Forms a Long-lived Oxy-Heme Complex.
J.Biol.Chem., v281: pp.9623-9632

34. Y Tang, M Poustovoitov, K Zhao, M Garfinkel, A Canutescu, R Dunbrack, P Adams, R Marmorstein. (2006) (72)
Structure of a Human ASF1a-HIRA Complex and Insights into Specificity of Histone Chaperone Complex Assembly.
Nat. Struct. Mol. Biol.. 13: 921-929

35. Ye, Q., Li, X., Wong, A., Wei, Q., Jia, Z. (2006) (36)
Structure of calmodulin bound to a calcineurin Peptide: a new way of making an old binding mode.
Biochemistry 45: 738-745

36. P Pawelek, N Croteau, C Ng-Thow-Hing, C Khursigara, N Moiseeva, M Allaire, J Coulton. (2006) (46)
Structure of TonB in Complex with FhuA, E. Coli Outer Membrane Receptor.
Science. 312: 1399-1402

37. A Accardi, S Lobet, C Williams, C Miller, R Dutzler. (2006) (232)
Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger.
J. Mol. Biol. 362: 691-699

38. Alvarez-Venegas, R., Sadder, M., Hlavacka, A., Baluska, F., Xia, Y., Lu, G., Firsov, A., Sarath, G., Moriyama, H., Dubrovsky, J. G., and Avramova, Z. (2006) (61d)
The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes.
Proc Natl Acad Sci U S A 103: 6049-54.

39. Payandeh, J.; Fujihashi, M.; Gillon, W.; Pai, E.F. (2006) (39)
The Crystal Structure of (S)-3-O-geranylgeranylglycerol-phosphate-synthase from Archaeoglobus fulgidus Reveals an Ancient Fold for an Ancient Enzyme.
J.Biol.Chem., 281:6070-6078.

40. Xu, W., Ahmed, S., Moriyama, H., and Chollet, R. (2006) (61d)
The Importance of the Strictly Conserved, C-terminal Glycine Residue in Phosphoenolpyruvate Carboxylase for Overall Catalysis: MUTAGENESIS AND TRUNCATION OF GLY-961 IN THE SORGHUM C4 LEAF ISOFORM.
J Biol Chem 281: 17238-45.

41. Ficko-Blean E & Boraston AB (2006) (147)
The Interaction of a Carbohydrate-binding Module from a Clostridium perfringens N-Acetyl-beta-hexosaminidase with Its Carbohydrate Receptor.
J Biol Chem. 281(49):37748-57.

42. H Hong, D Patel, L Tamm, B van den Berg. (2006) (47c)
The Outer Membrane Protein OmpW Forms an Eight-Stranded beta-Barrel with a Hydrophobic Channel.
J. Biol. Chem.. 281: 7568-7577 [ premiere ]

43. van Bueren AL, Boraston AB. (2006) (144)
The Structural Basis of alpha-Glucan Recognition by a Family 41 Carbohydrate-binding Module from Thermotoga maritima.
J Mol Biol. v365(3):555-560

44. S Gabelli, H Azurmendi, M Bianchet, L Amzel, A Mildva. (2006) (3)
X-ray, NMR, and Mutational Studies of the Catalytic Cycle of the GDP-Mannose Mannosyl Hydrolase Reaction.
Biochemistry. 45: 11290-11303

--- Year 2006 (No Project) ---