Publications-2006

--- Year 2006 ---

• Masuda, K., Richter, M., Song, X., Berezov, A., Masuda, K., Murali, R., Greene, M. I. & Zhang, H.(2006) x6a117
  

AHNP-streptavidin: a tetrameric bacterially produced antibody surrogate fusion protein against p185her2/neu.
Oncogene 25: 7740-7746.

• Yang, Yue, Yuan, J.S., Ross, J., Noel, J.P., and Pichersky, E.(2006) x6a12d
  

An Arabidopsis thaliana methyltransferase capable of methylating farnesoic acid.
Arch Biochem Biophys. 448(1-2):123-32..

• Hernandez Prada JA, Haire RN, Allaire M, Jakoncic J, Stojanoff V, Cannon JP, Litman GW, Ostrov DA.(2006) x6a23
  

Ancient evolutionary origin of diversified variable regions demonstrated by crystal structures of an immune-type receptor in amphioxus.
Nat Immunol. 7(8):875-82..

• Jakoncic, J., Di Michiel, M., Zhong, Z., Honkimaki, V., Jouanneau, Y. & Stojanoff, V.(2006) x6a49
  

Anomalous Diffraction at Ultra-High Energy for Protein Crystallography.
J. Appl. Cryst. 39: 831-841..

• Olia AS, Al-Bassam J, Winn-Stapley DA, Joss L, Casjens SR, Cingolani G.(2006) x6a155
  

Binding-induced stabilization and assembly of the phage P22 tail accessory factor gp4.
J Mol Biol. 363(2):558-76..

• M Yang*, K Horii*, AB Herr, and TL Kirley.(2006) x6a77
  

Calcium-dependent dimerization of human soluble calcium activated nucleotidase: Characterization of the dimer interface.
J. Biol. Chem. 281:28307-28317.

• Maximo Barreras, Mario A. Bianchet and Luis Ielpi.(2006) x6a170c
  

Crystallization and preliminary crystallographic cgaracterization of GumK, a membrane -associated glucorosyltransferase from Xanthomas Campestrid required for xanthan polysaccharide synthesis.
Acta Cryst. F. 62: 880-883.

• Cingolani G, Andrews D, Casjens S.(2006) x6a155
  

Crystallogenesis of bacteriophage P22 tail accessory factor gp26 at acidic and neutral pH.
Acta Crystallograph Sect F Struct Biol Cryst Commun. 62(Pt 5):477-82..

• Shao, C., Zhang, F., Kemp, M.M., Linhardt, R.J., Waisman, D.M., Head, J.F., Seaton, B.A.(2006) x6a61b
  

Crystallographic analysis of calcium-dependent heparin binding to annexin A2.
J.Biol.Chem. 281: pp.31689-31695.

• Wang, Y., Zhang, Y.J. & Ha, Y.(2006) x6a129
  

Crystal structure of a rhomboid family intramembrane protease
Nature 444: 179-183..

• Park, H.H., Wu, H.(2006) x6a111
  

Crystal Structure of RAIDD Death Domain Implicates Potential Mechanism of PIDDosome Assembly
J Mol Biol. v357: pp.358-364.

• Wilson, J.J., Kovall, R.A.(2006) x6a57
  

Crystal structure of the CSL-Notch-Mastermind ternary complex bound to DNA.
Cell 124: 985-996.

• Subbarao GV, van den Berg B.(2006) x6a47c
  

Crystal structure of the monomeric porin OmpG.
J Mol Biol. 360(4):750-9..

• R Williams, T Holyoak, G McDonald, C Gui, A Fenton.(2006) x6a89
  

Differentiating a Ligand's Chemical Requirements for Allosteric Interactions from Those for Protein Binding. Phenylalanine Inhibition of Pyruvate Kinase.
Biochemistry. 45: 5421-5429.

• Xi, J., Liu, R., Rossi, M. J., Yang, J., Loll, P. J., Dailey, W. P., & Eckenhoff, R. G.(2006) x6a97
  

High resolution features from low affinity interactions: Photoactive analogs of the haloether anesthetics.
ACS Chem. Biol. 1: 377-384..

• Hedstrom L, Gan L.(2006) x6a42
  

IMP dehydrogenase: structural schizophrenia and an unusual base.
Curr Opin Chem Biol. 10(5):520-5.

• Adams JJ, Pal, G., Jia, Z. Smith, S.P.(2006) x6a24
  

Mechanism of bacterial cell surface attachment and cohesin-dockerin specificity revealed by the structure of cellulosomal type II cohesin-dockerin complex
PNAS 103(2): 305-310.

• Bianchet, M.A., Krosky, D.J., Ghung, S., Seiple, L., Amzel, L.M., Stivers,J.T.(2006) x6a231
  

Mimicking damaged DNA with a small molecule inhibitor of human UNG2
Nucleic Acids Res v34: pp.5872-5879.

• Adams MA and Jia Z.(2006) x6a25
  

Modulator of Drug Activity B from Escherichia coli: Crystal structure of a prokaryotic homologue of DT-diaphorase.
J. Mol. Biol 359(2): 455-65..

• Schreiter ER, Wang SC, Zamble DB, Drennan CL(2006) x6a60
  

NikR-operator complex structure and the mechanism of repressor activation by metal ions.
PNAS 103: 13676-81.

• Pant, K., Crane, B.R.(2006) x6a28b
  

Nitrosyl-heme structures of Bacillus subtilis nitric oxide synthase have implications for understanding substrate oxidation.
Biochemistry 45: pp.2537-2544.

• Laptenko, O., Kim, S.-S., Lee, J., Starodubtseva, M., Cava, F., Berenguer, J., Kong, X.P., Borukhov, S.(2006) x6a7
  

pH-dependent conformational switch activates the inhibitor of transcription elongation
Embo J. 25: 2131-2141.

• Nicholson, M.J., Moradi, B., Seth, N.P., Xing, X., Cuny, G.D., Stein, R.L., Wucherpfennig, K.W.(2006) x6a61a
  

Small molecules that enhance the catalytic efficiency of HLA-DM.
J.Immunol. 176: 4208-4220.

• Ferreira, F.M., Mendoza-Hernandez, G., Aparicio, R., Fischer, H., Calcagno, M.L., Oliva, G.(2006) x6a9
  

Structural analysis of N-acetylglucosamine-6-phosphate deacetylase apoenzyme from Escherichia coli.
J.Mol.Biol. 359: pp.308-321.

• Adams MA, Singh VK, Keller BO and Jia Z.(2006) x6a29
  

Structural and biochemical characterization of gentisate 1,2-dioxygenase from Escherichia coli O157:H7.
Mol. Microbiol. 61(6):1469-84..

• Liu, C.J., Deavours, B.E., Richard, S.B., Ferrer, J.L., Blount, J.W., Huhman, D., Dixon, R.A., Noel, J.P.(2006) x6a12d
  

Structural basis for dual functionality of isoflavonoid O-methyltransferases in the evolution of plant defense responses.
Plant Cell 18: 3656-3669.

• Natasha Pashkova, Yui Jin S. Ramaswamy*, and Lois S. Weisman(2006) x6a21
  

Structural Basis for myosin V discrimination between distinct cargoes.
EMBO Journal 25: 693-700.

• K Horii, ML Kahn, and AB Herr(2006) x6a76
  

Structural basis for platelet collagen responses by the immune-type receptor glycoprotein VI.
Blood 108:936-942.

• Florence Pojer, Jean-Luc Ferrer, Stephane B. Richard, Dinesh A. Nagegowda, Mee-Lend Chye, Thomas J. Bach, and Joseph P. Noel(2006) x6a12b
  

Structural basis for the design of potent and species-specific inhibitors of 3-hydroxy-3-methylglutaryl CoA synthases
P NATL ACAD SCI USA 103(31):11491-11496.

• Botuyan, M.V., Lee, J., Ward, I.M., Kim, J.E., Thompson, J.R., Chen, J., Mer, G.(2006) x6a233
  

Structural Basis for the Methylation State-Specific Recognition of Histone H4-K20 by 53BP1 and Crb2 in DNA Repair.
Cell(Cambridge,Mass.) 127: 1361-1373.

• Hwang WC, Lin Y, Santelli E, Sui J, Jaroszewski L, Stec B, Farzan M, Marasco WA(2006) x6a91
  

Structural basis of neutralization by a human anti-severe acute respiratory syndrome spike protein antibody, 80R.
J Biol Chem. 281(45):34610-6..

• Holyoak, T., Sullivan, S.M., and Nowak, T.(2006) x6a89
  

Structural insights into the mechanism of PEPCK catalysis.
Biochemistry 45: 8254-8263..

• Sudhamsu, J., Crane, B.R.(2006) x6a141
  

Structure and Reactivity of a Thermostable Prokaryotic Nitric-oxide Synthase That Forms a Long-lived Oxy-Heme Complex.
J.Biol.Chem. 281: 9623-9632..

• Tang, Y., Poustovoitov, M.V., Zhao, K., Garfinkel, M., Canutescu, A., Dunbrack, R., Adams, P.D., and Marmorstein, R.(2006) x6a72
  

Structure of a human ASF1a/HIRA complex: Insights into specificity of histone chaperone complex assembly.
Nature Struc. Mol. Biol. 13: 921-929..

• Ye, Q., Li, X., Wong, A., Wei, Q., Jia, Z.(2006) x6a36
  

Structure of calmodulin bound to a calcineurin Peptide: a new way of making an old binding mode.
Biochemistry 45: 738-745.

• Pawelek, P.D., Croteau, N., Ng-Thow-Hing, C., Khursigara, C.M., Moiseeva, N., Allaire, M., Coulton, J.W.(2006) x6a46
  

Structure of TonB in complex with FhuA, E. coli outer membrane receptor.
Science. 312(5778):1399-402..

• A Accardi, S Lobet, C Williams, C Miller, R Dutzler.(2006) x6a232
  

Synergism Between Halide Binding and Proton Transport in a CLC-type Exchanger.
J. Mol. Biol. 362: 691-699.

• Alvarez-Venegas, R., Sadder, M., Hlavacka, A., Baluska, F., Xia, Y., Lu, G., Firsov, A., Sarath, G., Moriyama, H., Dubrovsky, J. G., and Avramova, Z.(2006) x6a61d
  

The Arabidopsis homolog of trithorax, ATX1, binds phosphatidylinositol 5-phosphate, and the two regulate a common set of target genes.
Proc Natl Acad Sci U S A 103: 6049-54..

• J. Payandeh, M. Fujihashi, W. Gillon & E.F. Pai(2006) x6a39
  

The Crystal Structure of (S)-3-O-geranylgeranylglycerol-phosphate-synthase from Archaeoglobus fulgidus Reveals an Ancient Fold for an Ancient Enzyme.
J. Biol. Chem. 281(9):6070-8..

• Xu, W., Ahmed, S., Moriyama, H., and Chollet, R.(2006) x6a61d
  

The Importance of the Strictly Conserved, C-terminal Glycine Residue in Phosphoenolpyruvate Carboxylase for Overall Catalysis: MUTAGENESIS AND TRUNCATION OF GLY-961 IN THE SORGHUM C4 LEAF ISOFORM.
J Biol Chem. 281: 17238-45..

• Ficko-Blean E & Boraston AB(2006) x6a147
  

The Interaction of a Carbohydrate-binding Module from a Clostridium perfringens N-Acetyl-beta-hexosaminidase with Its Carbohydrate Receptor.
J Biol Chem. 281(49):37748-57..

• Hong H, Patel DR, Tamm LK, van den Berg B.(2006) x6a47c
  

The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.
J Biol Chem. 281(11):7568-77..

• Hong H, Patel DR, Tamm LK, van den Berg B.(2006) x6a47
  

The outer membrane protein OmpW forms an eight-stranded beta-barrel with a hydrophobic channel.
J Biol Chem. 281(11):7568-77..

• van Bueren AL, Boraston AB.(2006) x6a144
  

The Structural Basis of alpha-Glucan Recognition by a Family 41 Carbohydrate-binding Module from Thermotoga maritima.
J Mol Biol. v365(3):555-560.

• Gabelli SB, Azurmendi HF, Bianchet MA, Amzel LM, Mildvan AS.(2006) x6a3
  

X-ray, NMR, and mutational studies of the catalytic cycle of the GDP-mannose mannosyl hydrolase reaction.
Biochemistry. 45(38):11290-303..

--- Year 2006 (No Project) ---